View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_8 (Length: 392)
Name: NF3516_low_8
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 36780789 - 36780430
Alignment:
| Q |
15 |
aaatgaacagcaatgtaagaagaaattggaaaaaagtaaggcatcaagtcaatgcatcaaatattaattacttcaatgcattgaggaagcatttgaacac |
114 |
Q |
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| T |
36780789 |
aaatgaacaacaatgtaagaagaaattggaaaaaagtaaggcatcaagtcaatgcatcaaatattaattacttcaatgcattgaggaagcatttgaacac |
36780690 |
T |
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| Q |
115 |
tcttatggtcaaagatggtatattttggaagcaagtggcaaaagcattatggctcaaagatgatgatttgaacattcacttctttcatgctctggcaact |
214 |
Q |
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| T |
36780689 |
tcttatggtcaaagatggtatattttggaagcaagtggcaaaagcattatggctcaaagatgatgatttaaacactcacttctttcatgctctggcaact |
36780590 |
T |
|
| Q |
215 |
tctataaggaaagtgaatgttgtatttgtaataatcagggccaatttatgtaagttaaaatagaatgtgtccaaccgatagtatatgttgatgtaggaga |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36780589 |
tctataaggaaagtgattgttgtatttgtaataatcagggccaatttatgtaagttaaaatagaatgtgtccaaccgatagtatatgttgatgtagaaga |
36780490 |
T |
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| Q |
315 |
agctttgagtctccttcttgcactagaagttgcaacgggttaatgtggatattgaactag |
374 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36780489 |
agctttgagtctccttcttgcactagaagttgcaactggttaatgtggatattgaactag |
36780430 |
T |
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