View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3517_high_4 (Length: 432)
Name: NF3517_high_4
Description: NF3517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3517_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 123 - 415
Target Start/End: Original strand, 18978819 - 18979112
Alignment:
| Q |
123 |
gttggggcagcaactaatacaaataataatttacaacattcactatgaagacaatattaccccaatttttcctagtacaagagaaaaggtaccaagtgct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
18978819 |
gttggggcagcaactaatacaaataataatttacaacattcattatgaagacaatattacaccaatttttcctagtacaagagaaaaggtgccaagtgtt |
18978918 |
T |
|
| Q |
223 |
ctacaaggnnnnnnnnnn-actcatggtagtagattacaaggctgaaagtaatataaagggaaaagaaattaataacagaccataagttattatgaatta |
321 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18978919 |
ctacaaggtttttttttttactcatggtagtagattacaaggctgaaagtaatataaagggaaaagaaattaataacagaccataagttattatgaatta |
18979018 |
T |
|
| Q |
322 |
aaaatcagaagtacagctgagtttaaatcatagtaataataacttatgaattaaagttgttatgatttcatttctgaaagtaatcttcagtcct |
415 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18979019 |
aaaatcagaagtacacctgagtttaattcatagtaataataacttatgaattaaagttgttatgatttcatttctgaaagtaatcttcagtcct |
18979112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 18978734 - 18978785
Alignment:
| Q |
30 |
ccaaaatcatttctttatttgcatacttagattagttgttacttctttactt |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18978734 |
ccaaaatcatttctttatttgcatacttagattagttgttacttctttactt |
18978785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University