View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3517_high_5 (Length: 268)
Name: NF3517_high_5
Description: NF3517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3517_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41335893 - 41336104
Alignment:
| Q |
1 |
gaataacaaccattacaataattcatggaatgattttcatggtcttgcatcttcttcggctagtcgtctgttataactttcatcatttgcactgctagaa |
100 |
Q |
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| T |
41335893 |
gaataacaaccattacaataattcatggaatgattttcatggtcttgcatcttcttcggctagtcgtctgttataactttcatcgtttgcactgctagaa |
41335992 |
T |
|
| Q |
101 |
aaagttgaattattggcagtaattagagatgnnnnnnnntatttaaattgatctctaatttttacacctctaacttatacttagagatgaaattagaggt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335993 |
aaagttgaattattggcagtaattagagatgaaaaaaaatatttaaattgatctctaatttttacacctctaacttatacttagagatgaaattagaggt |
41336092 |
T |
|
| Q |
201 |
gaatttcatgta |
212 |
Q |
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|||||||||||| |
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| T |
41336093 |
gaatttcatgta |
41336104 |
T |
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