View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3517_low_1 (Length: 712)
Name: NF3517_low_1
Description: NF3517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3517_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 681; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Original strand, 31603107 - 31603811
Alignment:
| Q |
1 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603107 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagttaa |
31603206 |
T |
|
| Q |
101 |
atcttctaataaaattgagatactgcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603207 |
atcttctaataaaattgagatactgcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaatt |
31603306 |
T |
|
| Q |
201 |
caactttaacatagccgcatcattaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagtagatc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603307 |
caactttaacatagccgcattattaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagtagatc |
31603406 |
T |
|
| Q |
301 |
agtctggagtggacatctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactaaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31603407 |
agtctggagtggacatctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactacaaa |
31603506 |
T |
|
| Q |
401 |
taagcataccatgaatgacagacttgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603507 |
taagcataccatgaatgacagacttgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataag |
31603606 |
T |
|
| Q |
501 |
attttgatttatcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttcacaagctatatcaaacctcgtttacctttgcaaaaaa |
600 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31603607 |
attttgatttgtcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttcacgggctatatcaaacctcgtttacctttgcaaaaaa |
31603706 |
T |
|
| Q |
601 |
tcatgatatcgtatacatattagacgtgagtaggggtttggagtcccctgcgactaccatgcgatgcagcatacctttgaaaccaactgagaaataccta |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603707 |
tcatgatatcgtatacatattagacgtgagtaggggtttggagtcccctacgactaccatgcgatgcagcatacctttgaaaccaactgagaaataccta |
31603806 |
T |
|
| Q |
701 |
tgctt |
705 |
Q |
| |
|
||||| |
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|
| T |
31603807 |
tgctt |
31603811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 31605563 - 31606064
Alignment:
| Q |
1 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||| |
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| T |
31605563 |
gttttcatagttttaagccatgtttagattagtttctaaagcttctcattcaaaacaaaattatgattcttcaaagtccttatgaagttgttgaagttaa |
31605662 |
T |
|
| Q |
101 |
atcttctaataaaattgagatactgcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaatt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
31605663 |
atcttctaataaaattgtgatactgcagaaacattattattggctgtcctaactctaaccaaagcagctcactgatagtttgaaaaactaactcccaatt |
31605762 |
T |
|
| Q |
201 |
caactttaacatagccgcatcattaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagt-agat |
299 |
Q |
| |
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|||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
31605763 |
caactttaacgtagccacattatcaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagtgacat |
31605862 |
T |
|
| Q |
300 |
cagtctggagtggacatctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaa--------gaaattgacctcacatttatttcaa |
391 |
Q |
| |
|
|| |||||| | ||||||||| ||||||| | |||| |||| |||||| | ||||||||||||||| ||||||| | ||||||||||| || |
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| T |
31605863 |
caatctggaattgacatctcctgaccaaaataggttttgcaggtaatgaaccagcaattcaatcaaagaaattgggaaattggctacacatttattttaa |
31605962 |
T |
|
| Q |
392 |
aactaaaaataagcataccatgaatgacagacttgactaactgaatccttcccattatggataaatgat----agagtaccagcagtgaattcccagtgt |
487 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
31605963 |
aactacaaataagcataccatgaa-gacagacttgactaatcgagtccttccagttatggataaatgatagggagagtaccggcagtaaattcccagtgt |
31606061 |
T |
|
| Q |
488 |
att |
490 |
Q |
| |
|
||| |
|
|
| T |
31606062 |
att |
31606064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 493 - 564
Target Start/End: Original strand, 31606101 - 31606171
Alignment:
| Q |
493 |
agaataagattttgatttatcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttca |
564 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| ||||||||| |
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| T |
31606101 |
agaataagattttgatttgtcaaagctaatcaattagccagagcattcaccatg-cctcctaaaatggttca |
31606171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7990325 - 7990227
Alignment:
| Q |
1 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagtta |
99 |
Q |
| |
|
|||||||||||| | ||||| | ||||||||||| ||||||| | |||| ||||| |||||| |||||||||||| || | ||||||||||||||| |
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| T |
7990325 |
gttttcatagttgaaggccatctctagattagttttgagagcttattattcagaacaattttatggttcttcaaagtccttttaaagttgtagaagtta |
7990227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 49779010 - 49779084
Alignment:
| Q |
25 |
tagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagtta |
99 |
Q |
| |
|
|||||||||||| ||||||| | |||| ||||| |||||| |||||||||||| || | ||||| ||||||||| |
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|
| T |
49779010 |
tagattagtttcgagagcttattattcagaacaattttatgcttcttcaaagtccttttaaagttttagaagtta |
49779084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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