View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3517_low_4 (Length: 444)
Name: NF3517_low_4
Description: NF3517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3517_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 1160667 - 1161079
Alignment:
| Q |
17 |
tcattgtaacttgggaagagctcgtggaggaggtgaaggtaatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1160667 |
tcattgtaacttgggaagagctcgtggaggaggtgaaggtaatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtg |
1160766 |
T |
|
| Q |
117 |
gagttggagtccgcgggattgcttagcacgttaatgagttgctgcctccttttgnnnnnnnggtccagtggtgttg-ctgctcactggcagcgatgctgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
1160767 |
gagttggagtccgcgggattgcttagcacgttaatgagctgctgcctccttttgtttttttggtccagtggtgttggctgctcactggcagcgatgctgt |
1160866 |
T |
|
| Q |
216 |
catgacagtccagcaagttttgttgtgttgtgtagccggttttttgaggaaggtctggcctctttggtggcagctttgctggtctgttggaggcagtgct |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
1160867 |
catgacagtccagcaagttttgttgtgtcgtgtagccggttttttgaggaaggtctggcctctttggtggcagctttgctggtctattggaggcggtgct |
1160966 |
T |
|
| Q |
316 |
aaggggttgaattttgatggttcataattggatttcagagccatagctcaagcctctgtggtgttgtgattgtttgtttttgtggttctagagatcaatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1160967 |
aaggggttgaattttgatggttcataattggatttcagagccataactcaagcctctgtagtgttgtgattgtttgtttttgtggttctagagatcaatt |
1161066 |
T |
|
| Q |
416 |
gttttctataggt |
428 |
Q |
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||||||||||||| |
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| T |
1161067 |
gttttctataggt |
1161079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 192 - 337
Target Start/End: Complemental strand, 21113901 - 21113756
Alignment:
| Q |
192 |
gctgctcactggcagcgatgctgtcatgacagtccagcaagttttgttgtgttgtgtagccggttttttgaggaaggtctggcctctttggtggcagctt |
291 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||| ||| |
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| T |
21113901 |
gctgttcactggcagcgctgctgtcatgacagtccagcaccagttgctgtgttgtgtagcctgttttgtgaggtaggtctggggtcttttgtggcaactt |
21113802 |
T |
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| Q |
292 |
tgctggtctgttggaggcagtgctaaggggttgaattttgatggtt |
337 |
Q |
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|||||| ||||||||||| |||||| |||||||||||||| ||||| |
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| T |
21113801 |
tgctgggctgttggaggcggtgctatggggttgaattttggtggtt |
21113756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 21977465 - 21977565
Alignment:
| Q |
40 |
gtggaggaggtgaaggtaatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtccgcgggattgct |
139 |
Q |
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||||| ||||||||||| ||| ||||||||||||| || | ||||| |||||||| || ||||| |||||||||||||||||||| |||||||||| |
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| T |
21977465 |
gtggaagaggtgaaggtgatgtcttggaggtggattattggtagaacctcaactccgagttgcatgttctatgagtggagttggagtcctcgggattgct |
21977564 |
T |
|
| Q |
140 |
t |
140 |
Q |
| |
|
| |
|
|
| T |
21977565 |
t |
21977565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 4636753 - 4636666
Alignment:
| Q |
41 |
tggaggaggtgaaggtaatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtcc |
128 |
Q |
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|||||| ||||||||| || | ||||||||||| || | ||||||||| |||||| || ||||||||||||||||||||| |||| |
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| T |
4636753 |
tggaggcggtgaaggtgttgtcgtggaggtggattctcggtagaaccacaattccggcttgcatgttttatgagtggagttggtgtcc |
4636666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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