View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3517_low_6 (Length: 428)
Name: NF3517_low_6
Description: NF3517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3517_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 15277202 - 15276795
Alignment:
| Q |
1 |
ctgtgtgtgaaaaactagggttttcttttcacggggatagagagccgcttctcatagagagagatacaacttaattacctagtcaataatgagaataatg |
100 |
Q |
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| T |
15277202 |
ctgtgtgtgaaaaactagggttttcttttcacggggatagagagtcgcttctcatagagagagatacaacttaattacctggtcaataacgagaataatg |
15277103 |
T |
|
| Q |
101 |
agacttcaaaacgaactacatcgagcgaacaatggctagactcgaaataattaattaactcaaaattttgatcaaatannnnnnnaattaataagtaatt |
200 |
Q |
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| T |
15277102 |
agacttcaaaacgaactacatcgaacgaacaatggctagactcgaaataattaatcaactcaaaattttgatcaaatatttttttaattaataagtaatt |
15277003 |
T |
|
| Q |
201 |
tattaatatgttaaacnnnnnnnntgattaatagattaatagttgtatagtgtaaaataaattgttaaacacattttgcctgaatgataaatgaagtaaa |
300 |
Q |
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| T |
15277002 |
tattaatatgttaaac-aaaaaaatgattaatagattaatagttgtatagtgtaaaataaattgttaaacacattttgcctgaatgataaatgaagtaaa |
15276904 |
T |
|
| Q |
301 |
aatcaaaataaacacaaaaaggcagtattaggtcttaatattaatattagtttccgatgttacaacttagtgcttcgattgtgatgatgtttacgtagaa |
400 |
Q |
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| T |
15276903 |
aatcaaaataaacacaaaaaggcagtattaggtcttaatattaatattagtttccgatgttacaacttagtgcttcgattgtgataatgtttacgtaaaa |
15276804 |
T |
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| Q |
401 |
tccaagttc |
409 |
Q |
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| T |
15276803 |
tccaggttc |
15276795 |
T |
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Back To:
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 44874114 - 44874188
Alignment:
| Q |
83 |
tcaataatgagaataatgagacttcaaaacg---aactacatcgagcgaacaatggctagactcgaaataattaa |
154 |
Q |
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|||||||||||||||| |||||| |||||| ||||| | |||||||||||||||||||||| |||||||||| |
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| T |
44874114 |
tcaataatgagaataacaagactttaaaacggtgaactagagcgagcgaacaatggctagactccaaataattaa |
44874188 |
T |
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