View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3518_high_12 (Length: 227)

Name: NF3518_high_12
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3518_high_12
NF3518_high_12
[»] chr8 (5 HSPs)
chr8 (10-68)||(8056764-8056822)
chr8 (10-65)||(17137177-17137232)
chr8 (127-174)||(8056880-8056927)
chr8 (127-174)||(17137293-17137340)
chr8 (127-173)||(443683-443729)
[»] chr1 (3 HSPs)
chr1 (11-65)||(11562570-11562624)
chr1 (127-174)||(11562461-11562508)
chr1 (8-63)||(15103442-15103497)
[»] chr7 (2 HSPs)
chr7 (10-65)||(6936425-6936480)
chr7 (127-174)||(6936317-6936364)
[»] chr5 (2 HSPs)
chr5 (12-63)||(18626337-18626388)
chr5 (127-173)||(18626225-18626271)
[»] chr3 (6 HSPs)
chr3 (11-63)||(16310880-16310932)
chr3 (11-63)||(18487664-18487716)
chr3 (11-63)||(18491874-18491926)
chr3 (131-173)||(16310995-16311037)
chr3 (131-173)||(18487779-18487821)
chr3 (131-173)||(18491989-18492031)
[»] chr2 (1 HSPs)
chr2 (136-174)||(23059252-23059290)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 8056764 - 8056822
Alignment:
Q  10 tcaccttctgctaagagataggcttggattaccttacactagattagatgtgacctaag 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8056764 tcaccttctcctaagagataggcttggattaccttacactagaatagatgtgacctaag 8056822  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 17137177 - 17137232
Alignment:
Q  10 tcaccttctgctaagagataggcttggattaccttacactagattagatgtgacct 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  17137177 tcaccttctcctaagagataggcttggattaccttacactagaatagatgtgacct 17137232  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 8056880 - 8056927
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  8056880 atgcggttcaggcttctcctggcttttatttgattttctagctttatc 8056927  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 17137293 - 17137340
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17137293 atgcggttcaggcttctcctggcttttatttgattttctagctttatc 17137340  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 443683 - 443729
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||    
T  443683 atgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 11562624 - 11562570
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgacct 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11562624 caccttctgttaagagataggcttggattaccttacactagattagatgtgacct 11562570  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 11562508 - 11562461
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||    
T  11562508 atgcggttcaggcttctcctgacttttatttgaatttctagcgttatc 11562461  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 15103442 - 15103497
Alignment:
Q  8 tctcaccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    |||||||||||| |||||||||| ||||||||||| || |||||||||||| ||||    
T  15103442 tctcaccttctgttaagagatagacttggattaccatagactagattagatatgac 15103497  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 6936480 - 6936425
Alignment:
Q  10 tcaccttctgctaagagataggcttggattaccttacactagattagatgtgacct 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  6936480 tcaccttctcctaagagataggcttggattaccttacactagaatagatgtgacct 6936425  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 6936364 - 6936317
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||    
T  6936364 atgcggttcaggcttctcctgacttttatttgattttctagctttatc 6936317  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 18626388 - 18626337
Alignment:
Q  12 accttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||| ||||    
T  18626388 accttctattaagagataggcttggattaccatacactagattagatatgac 18626337  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 18626271 - 18626225
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    ||||||||||||||||||| | || |||||| |||||||||||||||    
T  18626271 atgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 16310880 - 16310932
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  16310880 cacctcctgttaagagataggcttggattaccatacactagaatagatatgac 16310932  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18487664 - 18487716
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  18487664 cacctcctgttaagagataggcttggattaccatacactagaatagatatgac 18487716  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18491874 - 18491926
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  18491874 cacctcctgttaagagataggcttggattaccatacactagaatagatatgac 18491926  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 16310995 - 16311037
Alignment:
Q  131 ggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  16310995 ggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 18487779 - 18487821
Alignment:
Q  131 ggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  18487779 ggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 18491989 - 18492031
Alignment:
Q  131 ggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  18491989 ggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 23059252 - 23059290
Alignment:
Q  136 aggcttctcctggctcttatttgaatttctagctttatc 174  Q
    |||||||||||| || |||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttatc 23059290  T

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