View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_high_3 (Length: 540)
Name: NF3518_high_3
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 104263 - 104764
Alignment:
| Q |
18 |
aaagttttgcatgtccaaggtctctacaatgcatagatgaggaaccaaattaattaacagtgttgaggtgagtaataattggtaaggttgaagaaaagaa |
117 |
Q |
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| T |
104263 |
aaagttttgcatgtccaaggtctctacaatgcatagatgaggaaccaaattaattaacagtgttgaggtgagtaataattggtaaggttgaagaaaagaa |
104362 |
T |
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| Q |
118 |
gagaaagtaaaagatagttacagtctagtaacgtggttatcacgatcacaggtaacatgaaaccatgtacaaggatccaccaaagtggggtcccaactct |
217 |
Q |
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| T |
104363 |
gagaaagtaaaagatagttacagtctagtaacgtggttatcacgatcacaggtaacatgaaaccatgtacaaggatccaccaaagtggggtcccaactct |
104462 |
T |
|
| Q |
218 |
gtagaatgttatttgggtcttttacagctcttctgaatgcatacaaggcatcacctgttagttttcatcagacagacagacagaacatcaaaacaaaaga |
317 |
Q |
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| T |
104463 |
gtagaatgttatttgggtcttttacagctcttctgaatgcatacaaggcatcacctgttagttttcatcagacagacagacagaacatcaaaacaaaaga |
104562 |
T |
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| Q |
318 |
ttctttctttcagattatgtgtatgcttgtttgtatgtatcaatcaaaacaaaagagactgtactttacttaccttcagagtttgcatttgctatatcga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
104563 |
ttctttctttcagattatgtgtatgcttgtttgtatgtatcaatcaaaacaaaagagactgtactttacttaccttcagagtttgcatttgctatatcaa |
104662 |
T |
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| Q |
418 |
aagggtatgataataagagaatagtaaaaatggtaacaacatcaaaaggtgtgcttgtatccattaagcaaacccttttgagtttgaaacttattggcgc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
104663 |
aagggtatgataataagagaatagtaaaaatggtaacaacatcaaaaggtgtgcttgtatccattaagcaaacccttttgagtttgaaacttattggcgc |
104762 |
T |
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| Q |
518 |
aa |
519 |
Q |
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| T |
104763 |
aa |
104764 |
T |
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