View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_high_7 (Length: 249)
Name: NF3518_high_7
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 18978561 - 18978384
Alignment:
| Q |
1 |
caagtataaagatgagatattcatttttgtatcatttactatatcactaacaacaaagaagtgtctcttaaacaatgcttcttattctgatggtttactt |
100 |
Q |
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| T |
18978561 |
caagtataaagatgagatattcatttttgtatcatttactatatctctaacaacaaagaagtgtctcttaaacaatgctccttattctgatggtttactt |
18978462 |
T |
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| Q |
101 |
gttaatgagacccattaaacccgaatatccatttttacattccaaaaaattgtaggatattctcacgcttcaaacttt |
178 |
Q |
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| T |
18978461 |
gttagtgagacccattaaatccgaaaatccatttttacattccaaaaaattgtaggatattctcacgcttcaaacttt |
18978384 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 19028218 - 19028299
Alignment:
| Q |
110 |
acccattaaacccgaatatccatttttacattccaaaaaattgtaggatattctcacgcttcaaactttttgtctagcttta |
191 |
Q |
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||||||||| |||||||| ||||||||||||||| |||| | |||| |||||||| |||| ||||||| |||||| ||||| |
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| T |
19028218 |
acccattaagcccgaatacccatttttacattccgaaaattcttagggtattctcatgctttaaactttgtgtctaacttta |
19028299 |
T |
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