View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_high_9 (Length: 241)
Name: NF3518_high_9
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 41833257 - 41833161
Alignment:
| Q |
127 |
aaaagtcatattctaaattgcacgtgctgtgcatgtgtgtcaatcacattaattcacacattcatacatttgattaggaacattcccatgacaaagc |
223 |
Q |
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| T |
41833257 |
aaaagtcatattctaaattgcacgtgctgtgcatgcgtgtcaatcacattaattcacacattcatacatttgattaggaatattcccataacaaagc |
41833161 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 41833368 - 41833295
Alignment:
| Q |
15 |
cagagaaagcttcttgttttggacaaaataaaacaaagaatgttaaagtgcatcatttccttacttcaaccata |
88 |
Q |
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| T |
41833368 |
cagagaaagcttcttgttttggacaaaataaaacatagaatgttaaagtgcatcatttccttacttcaaccata |
41833295 |
T |
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