View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_10 (Length: 235)
Name: NF3518_low_10
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_10 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 48039840 - 48040068
Alignment:
| Q |
7 |
acatcatcaatctcagcactttgggtttgaaatgctttatcaaattggtttcttatgcatagttttcatttgcctattgcatttatttatctcacaagtc |
106 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48039840 |
acatcatcaatctcagtactttgggcttgaaatgctttatcaaattggtttcttatgcatagttttcatttgcctattgcatttatttatctcacaagtc |
48039939 |
T |
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| Q |
107 |
tcggtagagccatggtattcaatatgataacattctggcttgaatgttcttttacttcagtaatgatctgattatgtaatgagatcctattggatatgaa |
206 |
Q |
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| T |
48039940 |
tcagtagagctatgttattcaatatgataacattctggcttgaatgttcttttacttcagtaatgatctgattatgtaatgagatcctattggatatgaa |
48040039 |
T |
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| Q |
207 |
tattggcataaaatattgtcatcaaattc |
235 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
48040040 |
tattagcataaaatattgtcatcaaattc |
48040068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 48048317 - 48048541
Alignment:
| Q |
11 |
catcaatctcagcacttt-gggtttgaaatgctttatcaaattggtttcttatgcatagttttcatttgcctattgcatttatttatctcacaagtctcg |
109 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||| |||| |||| |||| || ||||||| ||| ||||||||||| |||||||| || |
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| T |
48048317 |
catcaatctcagcacttttgggcttgaattgctttatcaaattggcttctgatgcgtagtgttgatttgccagttgaatttatttatcacacaagtcacg |
48048416 |
T |
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| Q |
110 |
gtagagccatggtattcaatat-gataacattctggcttgaatgttcttttacttcagtaatgatctgattatgtaatgagatcctattggatatgaata |
208 |
Q |
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| T |
48048417 |
gtagagttatggtattcaatattgataacattctggtttgaatgttcttttacttcagtcatgatcagatcacataatgagatcctattggatatgaata |
48048516 |
T |
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| Q |
209 |
ttggcataaaatattgtcatcaaatt |
234 |
Q |
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|| |||| |||||||||||||||||| |
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| T |
48048517 |
ttagcat-aaatattgtcatcaaatt |
48048541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 48052807 - 48053028
Alignment:
| Q |
11 |
catcaatctcagcacttt-gggtttgaaatgctttatcaaattggtttcttatgcatagttttcatttgcctattgcatttatttatctcacaagtctcg |
109 |
Q |
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|||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||| ||| | |
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| T |
48052807 |
catcaatctcagcatttttgggcttgaattgctttatcaaattggtttctgatgcatagttttgattttcctgttgcatttatttatctcacatgtcaca |
48052906 |
T |
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| Q |
110 |
gtagagccatggtattcaat-atgataacattctggcttgaatgttcttttacttcagtaatgatctgattatgtaatgagatcctattggatatgaata |
208 |
Q |
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| T |
48052907 |
atagaattatggttttcaatgttgataacattct-gattgaatgttcttttgcttcagtcatgatcagatta-ataatgagat--tattgaatatgaata |
48053002 |
T |
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| Q |
209 |
ttggcataaaatattgtcatcaaatt |
234 |
Q |
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| T |
48053003 |
ttagaaagaaatattgtcatctaatt |
48053028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 29814045 - 29813886
Alignment:
| Q |
14 |
caatctcagcacttt-gggtttgaaatgctttatcaaattggtttcttatgcatagttttcatttgcctattgcatttatttatctcacaagtctcggta |
112 |
Q |
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||||||||||| ||| ||| ||| | |||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||| | || |
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| T |
29814045 |
caatctcagcatttttgggcttgcattgctttatcagtgtggtttctgatgcatagtttg-attttcctattgcatttatttatctcacaagtcacaata |
29813947 |
T |
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| Q |
113 |
gagccatggtattcaat-atgataacattctggcttgaatgttcttttacttcagtaatga |
172 |
Q |
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| T |
29813946 |
gaattatggtattcaatgttgataatattctgatttgaatgttcttttacttcagtcatga |
29813886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 48054170 - 48054238
Alignment:
| Q |
133 |
ataacattctggcttgaatgttcttttacttcagtaatgatctgattatgtaatgagatcctattggat |
201 |
Q |
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|||||| |||| |||||||||||||| |||| || |||||||||||| || |||||||| ||||||| |
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| T |
48054170 |
ataacaatctgatttgaatgttcttttgcttctgtcatgatctgattacatactgagatccaattggat |
48054238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 32678970 - 32678753
Alignment:
| Q |
13 |
tcaatctcagcacttt-gggtttgaaatgctttatcaaattggtttcttatgcatagttttcatttgcctattgcatttatttatctcacaagtctcggt |
111 |
Q |
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|||||||||||| ||| ||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| | || |
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| T |
32678970 |
tcaatctcagcatttttgggcttgaactgctttatcaaattagtttctgatgcatagttttcatttgcctattgcatttatttatctcacatgtcacagt |
32678871 |
T |
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| Q |
112 |
agagccatggtattcaata-tgataacattctggcttgaatgttcttttacttcagtaatgatctgattatgtaatgagatcctattggatatgaatatt |
210 |
Q |
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| T |
32678870 |
agagccatggtattcaatattgataacattctggtttgaatgttcttttgcttcagtcgtgatcatattacataatgaaaccctattggatatgaatatt |
32678771 |
T |
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| Q |
211 |
ggcataaaatattgtcat |
228 |
Q |
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| | || |||||||||| |
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| T |
32678770 |
agaaaaatatattgtcat |
32678753 |
T |
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