View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_11 (Length: 232)
Name: NF3518_low_11
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 20372695 - 20372924
Alignment:
| Q |
1 |
atgaagaatgatatgttgcaagttttaatgatgttttcttgaaatttaggtacaatatcatgtgatgacttgttgttttctagttttaatgcttcctgat |
100 |
Q |
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| T |
20372695 |
atgaagaatgatgtgttgcaaattttaatgatgttttcttgaaatttaggtacaatatcatgtgatgacttgttgttttctagttttaatgtttcctgat |
20372794 |
T |
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| Q |
101 |
tgacttcaattagtttcataatctttctaattcaaatgaaaatggtttttgctcataaaattgtacttaacaccatggcggaaggctagcttacatatga |
200 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20372795 |
tgacttgaattagtttcataatatttctaattcaaatgaaaatggtttttgctcataaaattgtacttaacaccatggcggaaggctagcttacatatga |
20372894 |
T |
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| Q |
201 |
aaagttcagtatttcattcttcatcaaggt |
230 |
Q |
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||||||| | |||||||||||||||||||| |
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| T |
20372895 |
aaagttctgcatttcattcttcatcaaggt |
20372924 |
T |
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