View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3518_low_12 (Length: 227)

Name: NF3518_low_12
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3518_low_12
NF3518_low_12
[»] chr8 (5 HSPs)
chr8 (10-68)||(8056764-8056822)
chr8 (10-65)||(17137177-17137232)
chr8 (127-174)||(8056880-8056927)
chr8 (127-174)||(17137293-17137340)
chr8 (127-173)||(443683-443729)
[»] chr1 (3 HSPs)
chr1 (11-65)||(11562570-11562624)
chr1 (127-174)||(11562461-11562508)
chr1 (8-63)||(15103442-15103497)
[»] chr7 (2 HSPs)
chr7 (10-65)||(6936425-6936480)
chr7 (127-174)||(6936317-6936364)
[»] chr5 (2 HSPs)
chr5 (12-63)||(18626337-18626388)
chr5 (127-173)||(18626225-18626271)
[»] chr3 (6 HSPs)
chr3 (11-63)||(16310880-16310932)
chr3 (11-63)||(18487664-18487716)
chr3 (11-63)||(18491874-18491926)
chr3 (131-173)||(16310995-16311037)
chr3 (131-173)||(18487779-18487821)
chr3 (131-173)||(18491989-18492031)
[»] chr2 (1 HSPs)
chr2 (136-174)||(23059252-23059290)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 8056764 - 8056822
Alignment:
Q  10 tcaccttctgctaagagataggcttggattaccttacactagattagatgtgacctaag 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8056764 tcaccttctcctaagagataggcttggattaccttacactagaatagatgtgacctaag 8056822  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 17137177 - 17137232
Alignment:
Q  10 tcaccttctgctaagagataggcttggattaccttacactagattagatgtgacct 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  17137177 tcaccttctcctaagagataggcttggattaccttacactagaatagatgtgacct 17137232  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 8056880 - 8056927
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  8056880 atgcggttcaggcttctcctggcttttatttgattttctagctttatc 8056927  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 17137293 - 17137340
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17137293 atgcggttcaggcttctcctggcttttatttgattttctagctttatc 17137340  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 443683 - 443729
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||    
T  443683 atgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 11562624 - 11562570
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgacct 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11562624 caccttctgttaagagataggcttggattaccttacactagattagatgtgacct 11562570  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 11562508 - 11562461
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||    
T  11562508 atgcggttcaggcttctcctgacttttatttgaatttctagcgttatc 11562461  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 15103442 - 15103497
Alignment:
Q  8 tctcaccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    |||||||||||| |||||||||| ||||||||||| || |||||||||||| ||||    
T  15103442 tctcaccttctgttaagagatagacttggattaccatagactagattagatatgac 15103497  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 6936480 - 6936425
Alignment:
Q  10 tcaccttctgctaagagataggcttggattaccttacactagattagatgtgacct 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  6936480 tcaccttctcctaagagataggcttggattaccttacactagaatagatgtgacct 6936425  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 6936364 - 6936317
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttatc 174  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||    
T  6936364 atgcggttcaggcttctcctgacttttatttgattttctagctttatc 6936317  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 18626388 - 18626337
Alignment:
Q  12 accttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||| ||||    
T  18626388 accttctattaagagataggcttggattaccatacactagattagatatgac 18626337  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 18626271 - 18626225
Alignment:
Q  127 atgcggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    ||||||||||||||||||| | || |||||| |||||||||||||||    
T  18626271 atgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 16310880 - 16310932
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  16310880 cacctcctgttaagagataggcttggattaccatacactagaatagatatgac 16310932  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18487664 - 18487716
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  18487664 cacctcctgttaagagataggcttggattaccatacactagaatagatatgac 18487716  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18491874 - 18491926
Alignment:
Q  11 caccttctgctaagagataggcttggattaccttacactagattagatgtgac 63  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  18491874 cacctcctgttaagagataggcttggattaccatacactagaatagatatgac 18491926  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 16310995 - 16311037
Alignment:
Q  131 ggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  16310995 ggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 18487779 - 18487821
Alignment:
Q  131 ggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  18487779 ggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 18491989 - 18492031
Alignment:
Q  131 ggttcaggcttctcctggctcttatttgaatttctagctttat 173  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  18491989 ggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 23059252 - 23059290
Alignment:
Q  136 aggcttctcctggctcttatttgaatttctagctttatc 174  Q
    |||||||||||| || |||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttatc 23059290  T

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