View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_13 (Length: 210)
Name: NF3518_low_13
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26604243 - 26604452
Alignment:
| Q |
1 |
ttgtatgaggacctggttcttctcaatggtgacaatttactgagtcatctgataatggaaaatattcgagatatgtttatttagatttttctcttg-acn |
99 |
Q |
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| T |
26604243 |
ttgtatgaggacctggttcttctcaatggtgacaatttactgagtcatctgataatggaaaatattcgagatatgtttatttagatttttctcttgaaaa |
26604342 |
T |
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| Q |
100 |
nnnnnnntaaaataaatcagattcttagactataaataaagaccgagaggaaaaccattacttcctacctacgaagattaacaaattaactttgtgtcaa |
199 |
Q |
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| T |
26604343 |
aaaaaaaaaaaaaaaatcagattcttagactataaataaagaccgagaggaaaaccattacttcctacctacgaagattaacaaattaactttgtttcaa |
26604442 |
T |
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| Q |
200 |
agcaaagttc |
209 |
Q |
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|||||||||| |
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| T |
26604443 |
agcaaagttc |
26604452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 26596585 - 26596632
Alignment:
| Q |
20 |
ttctcaatggtgacaatttactgagtcatctgataatggaaaatattc |
67 |
Q |
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| T |
26596585 |
ttctcaatggtgacaatttactgagtcatctgataatggaaaatattc |
26596632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 26596677 - 26596739
Alignment:
| Q |
124 |
ttagactataaataaagaccgagaggaaaaccattacttcctacctacgaagattaacaaatt |
186 |
Q |
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|||||||||||||||||| | ||||||| |||||||||||||||| || ||||| || ||||| |
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| T |
26596677 |
ttagactataaataaagatcaagaggaataccattacttcctaccaactaagataaataaatt |
26596739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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