View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_2 (Length: 607)
Name: NF3518_low_2
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 10 - 604
Target Start/End: Original strand, 37218952 - 37219542
Alignment:
| Q |
10 |
catcatcataatttaattaaaaagtattaaattgtacaatgttctttaattaaggctatatacagttcactaaggctaggaagaccaaatgaaaatagta |
109 |
Q |
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| T |
37218952 |
catcatcataatttaattaaaaagtattaaattgtacaatgttctttaattaaggctatatatagttcactaaggctaggaagaccaaatgagaatagta |
37219051 |
T |
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| Q |
110 |
cattgattataatatcatattcgacattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttgcgat |
209 |
Q |
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| T |
37219052 |
cattgattataatatcatactcgacattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttgggat |
37219151 |
T |
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| Q |
210 |
aattttcttgccaacctaggattagaattgaattaataactcaaatagttctttaaaaaacactcatataattatggtatcttaaaggaaatgtaattga |
309 |
Q |
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| T |
37219152 |
aattttcttgccaacctaggattagaattgaattaataactcaaatagttcttaaaaaaacactcatataattatggtatcttaaaggaaatgtaattga |
37219251 |
T |
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| Q |
310 |
tcttgagacttccatataaacttgtttaagaaagaaatgtaactaacaactataaaaatttctcaaacaaaaactataaagattatgccaattttaactg |
409 |
Q |
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| T |
37219252 |
tcttgagacttccatataaacttgtttaagaaagaaatgtaactaacaactatataaatttctcaaacaaaaactat-aagattatgccaattttaactg |
37219350 |
T |
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| Q |
410 |
tatatgtaaacacttgaattagaagagtaaggatgttttgtcgcatatgtcatgtgagagtaaggcattaaagttttttgattagatataaaacgaccat |
509 |
Q |
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| T |
37219351 |
tatatgtaaacacttgaattagaagagtaaggatgttttgtcgcatatgtcatgtgagagtaaggcattaaagttttttgattagatataaaacgaccat |
37219450 |
T |
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| Q |
510 |
actttctnnnnnnnnnnnncaaagaaaagaccaactgcatcatgtctctgtttcctaacagtagtgtggataagaatggtagggtctctgctcct |
604 |
Q |
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| T |
37219451 |
actttct---aaaaaaaaacaaagaaaagaccaactgcatcatgtctctgtttcctaacagtagtgtggataagaatggtagggtctctgctcct |
37219542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 6412011 - 6411940
Alignment:
| Q |
134 |
cattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttg |
205 |
Q |
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| T |
6412011 |
cattctttatcttatccatctttttaattgaaatgtctcgttaaagtatatttacaaggaagttaactcttg |
6411940 |
T |
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