View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_4 (Length: 521)
Name: NF3518_low_4
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 3908181 - 3908688
Alignment:
| Q |
17 |
agattttgatattaattttgcagagacaagtagaagaatttcttaattcagactcaaaa-----------aatcaaacttttcaaacacttttcccttaa |
105 |
Q |
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| T |
3908181 |
agattttcatattaattttgcagagacaagtagaacaatttcttaattcagactcaaaaaaatccgaaaaaatcaaacttttcaaacacttttcccttaa |
3908280 |
T |
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| Q |
106 |
tagttgaatcgtaagaaaaaccagaaaccaaccaatagcagtagcaaccggtttttgttttgttatttttgattataaatatggcacgtctctgtttaga |
205 |
Q |
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| T |
3908281 |
tggttgcatcgtaagaaaaaccagaaaccaaccaatagcagtagcaaccggtttttgttttcttatttttgattataaatatggcacgtctctgtttaga |
3908380 |
T |
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| Q |
206 |
aaacgcacactcaaataaaaactgagagatggagcaagaaagtggagatggtggaagaagaggtgagatgagtaagcttgttcaagctcatcctcaacct |
305 |
Q |
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| T |
3908381 |
aaacgcacactcaaataaaaactgagagatggagcaagaaagtggagatggtggaagaagaggtgagatgagtaagcttgttcaagctcatcctcaacct |
3908480 |
T |
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| Q |
306 |
cagaagtgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggt |
405 |
Q |
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| T |
3908481 |
cagaagtgtcctaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctatctcagcctcgtttcttctgcaaaacatgcagaaggt |
3908580 |
T |
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| Q |
406 |
actggactcaaggtggaacattgagaaatgttcctattggtggtggttgtcgtaagggaaagaaagccaaaactccatcatcctcaacaccatcaagtaa |
505 |
Q |
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| T |
3908581 |
actggactcaaggtggaacattgagaaatgttcctattggtggtggttgtcgtaagggaaagaaatccaaaactccatcatcctcaacaccatcaagtaa |
3908680 |
T |
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| Q |
506 |
ttcttctc |
513 |
Q |
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|||||||| |
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| T |
3908681 |
ttcttctc |
3908688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 451
Target Start/End: Original strand, 39741064 - 39741183
Alignment:
| Q |
332 |
caacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactggactcaaggtggaacattgaga |
431 |
Q |
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| T |
39741064 |
caacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagg |
39741163 |
T |
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| Q |
432 |
aatgttcctattggtggtgg |
451 |
Q |
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| T |
39741164 |
aatgttcctgttggaggtgg |
39741183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 34646049 - 34646118
Alignment:
| Q |
384 |
ttctgcaaaacatgcagaaggtactggactcaaggtggaacattgagaaatgttcctattggtggtggtt |
453 |
Q |
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| T |
34646049 |
ttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaaacattcctgttggtggtggtt |
34646118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 13481012 - 13481069
Alignment:
| Q |
308 |
gaagtgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagc |
365 |
Q |
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| T |
13481012 |
gaagtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagc |
13481069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 34976278 - 34976165
Alignment:
| Q |
312 |
tgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactgga |
411 |
Q |
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| T |
34976278 |
tgtccaaggtgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggtattgga |
34976179 |
T |
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| Q |
412 |
ctcaaggtggaaca |
425 |
Q |
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| |||| |||||| |
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| T |
34976178 |
ccaaaggaggaaca |
34976165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 453
Target Start/End: Original strand, 41895787 - 41895928
Alignment:
| Q |
312 |
tgtccaaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactgga |
411 |
Q |
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| T |
41895787 |
tgtccaaggtgcaattcaactaacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggtattgga |
41895886 |
T |
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| Q |
412 |
ctcaaggtggaacattgagaaatgttcctattggtggtggtt |
453 |
Q |
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| T |
41895887 |
ctgaaggtggttctttaagaaatgttcctgtaggtggtggtt |
41895928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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