View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_5 (Length: 325)
Name: NF3518_low_5
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 10265904 - 10265600
Alignment:
| Q |
1 |
cgacactgacacgttgataccaatgataatttgagaaaatgaaagtaattaaaacttgtcacaagtatcggtgcatcgtcgttgctggaaaccaaacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265904 |
cgacactgacacgttgataccaatgataatttgagaaaatgaaagtaattaaaacttgtcacaagtatcggtgcatcgtcgttgctggaaaccaaacaca |
10265805 |
T |
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| Q |
101 |
tctttaatttgaagtgtctatgctatatgaatttatttttatgaattactatcacatacaccgaatatgacactgacacgtcgacccgataaaaatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10265804 |
tctttaatttgaagtgtctatgctatatgaatttatttttatgaaatactatcacatacaccgaatatgacactgacacgtcgacctgataaaaatttga |
10265705 |
T |
|
| Q |
201 |
aaaaattgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacaccaatacatatgtgacaacagacatttcttcaatgtgtcggtt |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
10265704 |
aaaaactgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacaccaatacatatgtgacaatagacatttcttcaatgtgtcagtt |
10265605 |
T |
|
| Q |
301 |
cggtt |
305 |
Q |
| |
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||||| |
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| T |
10265604 |
cggtt |
10265600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 10273586 - 10273292
Alignment:
| Q |
7 |
tgacacgttgataccaatgataatttgagaaaatgaaagtaattaaaacttgtcacaagtatcggtgcatcgtcgttgctggaaaccaaacacatcttta |
106 |
Q |
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| T |
10273586 |
tgacacattgacatcaatgataatttgagaaaatgaa--tagttaaaactcgtcataagtatcagtgcaatgttgttgtaggaaaccaaatacatcttca |
10273489 |
T |
|
| Q |
107 |
atttgaagtgtctatgctatatgaatttatttttatgaattactatcacatacaccgaatatgacactgacacgtcgacc-cgataaaaatttgaaaaaa |
205 |
Q |
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|| | ||||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||| |||||| ||||| ||||| |
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| T |
10273488 |
atcttaagtgtcaatgcaatatgaatttatttttatgaggcattatcacatacatcgaatatgacactgacacgtcaacctcgataataatttaaaaaag |
10273389 |
T |
|
| Q |
206 |
ttgaagtaattgaattt--aatcataaatgtcagtgtcgtattgttgtcggacaccaatacatatgtgacaacagacatttcttcaatgtgtcggttc |
301 |
Q |
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||||||||| ||||| | | | || |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
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| T |
10273388 |
ttgaagtaa-tgaatatcgaggttgacatatcagtgtcgtatcgttgtcggacaccaatacatatgggacatcagacatttcttcagtgtgtcggttc |
10273292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11815814 - 11815854
Alignment:
| Q |
1 |
cgacactgacacgttgataccaatgataatttgagaaaatg |
41 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
11815814 |
cgacactgacacgttgacaccaataataatttgagaaaatg |
11815854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 7251033 - 7250988
Alignment:
| Q |
5 |
actgacacgttgataccaatgataatttgagaaaatgaaagtaatt |
50 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
7251033 |
actgacacgttgacaccaataataatttgagaaaatgaaagtaatt |
7250988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 1555932 - 1555860
Alignment:
| Q |
186 |
ccgataaaaatttgaaaaaattgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacaccaa |
261 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| |||| | | ||||| || |||||||| ||||||||||||| |
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| T |
1555932 |
ccgataataatttgaaaaa---gaagtaattgaatataattacatatgtctgtctcgtattggtgtcggacaccaa |
1555860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 52067083 - 52067123
Alignment:
| Q |
3 |
acactgacacgttgataccaatgataatttgagaaaatgaa |
43 |
Q |
| |
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|||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
52067083 |
acactgacacgtcgataccaataataatttaagaaaatgaa |
52067123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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