View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3518_low_6 (Length: 250)
Name: NF3518_low_6
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42807613 - 42807853
Alignment:
| Q |
1 |
ccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttt |
100 |
Q |
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| T |
42807613 |
ccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttt |
42807712 |
T |
|
| Q |
101 |
tgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttcttcaagtattggtccaaccgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42807713 |
tgcttatgttagacgcgtcaatagatttcttaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttcttcaagtattggtccaaccgtc |
42807812 |
T |
|
| Q |
201 |
ggtcattatggtgtattctaatttcttctgaacaaccctat |
241 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
42807813 |
ggtcattatggtgtattctaatttcttcttaacgaccctat |
42807853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42765250 - 42765493
Alignment:
| Q |
1 |
ccatcaactttgta--atttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtt |
98 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765250 |
ccatcaactttgtataattttctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtt |
42765349 |
T |
|
| Q |
99 |
tttgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttctt-caagtattggtccaacc |
197 |
Q |
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| T |
42765350 |
tttgcttatgttagatgcgtcaatagatttcctaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttcttccaagtattggtccaacc |
42765449 |
T |
|
| Q |
198 |
gtcggtcattatggtgtattctaatttcttctgaacaaccctat |
241 |
Q |
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| T |
42765450 |
gtcggtcattatggtgtattttaatttcttcttaacaaccctat |
42765493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33050850 - 33051090
Alignment:
| Q |
1 |
ccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33050850 |
ccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaaccttaacaacaatatcatcttaaaaacattgtcggcagtttt |
33050949 |
T |
|
| Q |
101 |
tgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttcttcaagtattggtccaaccgtc |
200 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
33050950 |
tgcttatgatagacgcatcaatagatttcttaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttctttaagtattggtccaaccgtc |
33051049 |
T |
|
| Q |
201 |
ggtcattatggtgtattctaatttcttctgaacaaccctat |
241 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33051050 |
ggtcattatggtgtattctaatttcttcttaacaaccctat |
33051090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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