View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3518_low_8 (Length: 245)
Name: NF3518_low_8
Description: NF3518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3518_low_8 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 1958898 - 1959132
Alignment:
| Q |
11 |
atcatcaatagcagaaagataatgtttacaaataaaaggcaatagaaagtgacataacataaccttaaatttgtactagtataataaatatgagaaaagt |
110 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1958898 |
atcaacaatagcagaaagataatgtgtacacataaaaggcaatagaaagtgacataacataaccttaaatttgtactagtataataaatatgagaaaagt |
1958997 |
T |
|
| Q |
111 |
atcaacatatattttaaatttatcttcacacacatacacacattctttctcacattttctttgtgtatttattttgtcatggcttgtgttatccttcaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1958998 |
atcaacatatattttaaatttatcttcacacacatacacacattctttctcacattttctttgtgtatttattttgtcatggcttgtgttatccttcaca |
1959097 |
T |
|
| Q |
211 |
cggccactgccactgccacttttctctttctttct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959098 |
cggccactgccactgccacttttctctttctttct |
1959132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 2024658 - 2024574
Alignment:
| Q |
11 |
atcatcaatagcagaaagataatgtttacaaataaa----aggcaatagaaagtgacataacataaccttaaatttgtactagta |
91 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2024658 |
atcaacaatagcagaaagataatgtgtacaaattaatagaaggcaatagaaagtgacatacagtaaccttaaatttgtactagta |
2024574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 2024493 - 2024427
Alignment:
| Q |
153 |
ttctttctcacattttcttt--gtgtatttattttgtcatggcttgtgttatccttcacacggccact |
218 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| | ||||| | ||||||||||| ||||| |
|
|
| T |
2024493 |
ttctttctcatattttctttttgtgtatttattttgtcatagtttgtgct-tccttcacacgcccact |
2024427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University