View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3519_high_1 (Length: 597)
Name: NF3519_high_1
Description: NF3519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3519_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 65 - 579
Target Start/End: Complemental strand, 10595400 - 10594886
Alignment:
| Q |
65 |
caacattggtatatatctaatgcatatacatgaattgcagttaaatatcgttgctgctcaatgaccaaacacaaataaattatattaactaagacagatt |
164 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595400 |
caacattggtatatatctaatgcatatacgtgaattgcagttaaatatcgttgctgctcaatgaccaaacacaaataaattatattaactaagacagatt |
10595301 |
T |
|
| Q |
165 |
ttgacgaatttttgcacggattctctttactggttagtaataacagaaaaaccaagaaagatagaaaagagaaacaatcaacattaaaacaataaattct |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595300 |
ttgacgaatttttgcacggattctctttattggttagcaataacagaaaaaccaagaaagatagaaaagagaaacaatcaacattaaaacaataaattct |
10595201 |
T |
|
| Q |
265 |
tcttggtcctatagatccaaatatcctatcatctttggcataaaaaactgcatt-ttttggttacaacaataaggcatgcatcaagcacatcatttcctc |
363 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10595200 |
tcttggtcctatagatcctaatatcctatcatctttggcataaaaaactgcatttttttggttacaacaataaggcatacatcaagcacatcatttcctc |
10595101 |
T |
|
| Q |
364 |
caattcaaacaatatgaagcaaacacatctgaggatcttttttattacataggcaaaacaatttggtaatttctctagagcttctcactattatactaca |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10595100 |
caattcaaacaatatgaagcaaacacatctgaggatcttttttattacataggcaaaacaatttggtaatatctctagagcttctcactattatactaca |
10595001 |
T |
|
| Q |
464 |
tcaaaatttacaaaattcaacacattcctggttcacaaagttgtactgctattatacagggaatttaacatacacaaacctttcctatattttattatct |
563 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
10595000 |
tcaaaattt-caaaattcaacacattcctggttcacaaagttgtactgctattatacagggaatttaacatacaaaaacctttcctatattctattatct |
10594902 |
T |
|
| Q |
564 |
atactatacacgatat |
579 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10594901 |
atactatacacgatat |
10594886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 10595433 - 10595402
Alignment:
| Q |
16 |
atgcaccattaataacaagattgatgtcaatt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10595433 |
atgcaccattaataacaagattgatgtcaatt |
10595402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University