View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_high_10 (Length: 393)
Name: NF3520_high_10
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 26275704 - 26276077
Alignment:
| Q |
18 |
atttagaagcttgaattatgttgaagctacagcctacttccacaataacactccgaaacagatgttccatcgaatgcgcattattattgaaatatctatc |
117 |
Q |
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| T |
26275704 |
atttagaagcttgaattatgttgaagctacagcctacttccacaataacactccgaaacagatgttccatcgaatgcgcattattattgaaatatctatc |
26275803 |
T |
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| Q |
118 |
attacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctgaacctgtttgctccaattaccaacacaactgtcaatcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26275804 |
attacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctgaacctgtttgcttcaattaccaacacaactgtcaatcaca |
26275903 |
T |
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| Q |
218 |
ttcagccaccggagcagtccgggccttggtcaatcccagtacacaacctctgccaaagcttctgcgtttctgggcagctgaagaatatatgagtggattt |
317 |
Q |
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| T |
26275904 |
ttcagccaccggagcagtccgggccttggtcaatcccagtacacaacctctgccaaagcttctgcgtttctgggcagctgaagaatatatgagtggattt |
26276003 |
T |
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| Q |
318 |
ttcttcatgttgatgacagaaacagaaaattgacacaatcttacagccccttttcgtaagattcttatcagtcg |
391 |
Q |
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| T |
26276004 |
ttcttcatgttgatgacagaaacagaaaattgacacaatcttacagccccttttcgtaagattctcatcagtcg |
26276077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 39397830 - 39397955
Alignment:
| Q |
79 |
atgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctga |
178 |
Q |
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| T |
39397830 |
atgttccaacgaattcgccttattattgaaataacgctcattacgttctatctaaatcttccaaaccgtgtgcagaaccgctgctattaagacttgctgc |
39397929 |
T |
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| Q |
179 |
acctgtttgctccaattaccaacaca |
204 |
Q |
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| T |
39397930 |
accgctttgctccaattaccaacaca |
39397955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 43673411 - 43673469
Alignment:
| Q |
283 |
gtttctgggcagctgaagaatatatgagtggatttttcttcatgttgatgacagaaaca |
341 |
Q |
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| T |
43673411 |
gtttctgggcagctgaagaaaatatgactggaggtttcttcatgttgatgacagaaaca |
43673469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 23893301 - 23893197
Alignment:
| Q |
100 |
attattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctgaacctgtttgctccaattacca |
199 |
Q |
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|||||||||||| | |||||||| ||||| ||| || |||| | ||||||||||||||||||| || || ||||| ||| |||||||||||||||| |
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| T |
23893301 |
attattgaaataacgctcattacgatctattcaaatcttccaaactgtgtgcagaactgctgctattaagacttgctgcaccgctttgctccaattacca |
23893202 |
T |
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| Q |
200 |
acaca |
204 |
Q |
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||||| |
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| T |
23893201 |
acaca |
23893197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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