View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3520_high_14 (Length: 335)
Name: NF3520_high_14
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 44308138 - 44308395
Alignment:
| Q |
19 |
atctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44308138 |
atctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaac |
44308237 |
T |
|
| Q |
119 |
accccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttcc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44308238 |
accccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttaaaaaaaaaaaatatgaattcttcaacaatttgttccctgttcc |
44308337 |
T |
|
| Q |
219 |
ttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44308338 |
ttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt |
44308395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 44194193 - 44194442
Alignment:
| Q |
19 |
atctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaac |
118 |
Q |
| |
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||||||||||||||||| || ||||| |||||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |
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| T |
44194193 |
atctagattattggatcaccatttccaaagcatcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaattttcgttactataaaac |
44194292 |
T |
|
| Q |
119 |
accccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttcc |
218 |
Q |
| |
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|| ||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
44194293 |
actccaacacctatgaaaccaaacacac-tcccgtcaaaccaaggaaccctaattt-------aaaaaaatgaattcttcaacaatttgttccatgttcc |
44194384 |
T |
|
| Q |
219 |
ttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
44194385 |
ttggtttgatcctaatttctcaatcaccatttgcatcaaatgcaagacttcttggttt |
44194442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 44315192 - 44315442
Alignment:
| Q |
23 |
agattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaattt--ccgttactataaaacac |
120 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| || |||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| || |
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| T |
44315192 |
agattattggatcgccgtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttttccgttactataaaatac |
44315291 |
T |
|
| Q |
121 |
cccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttcctt |
220 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
44315292 |
ctcaacacctatgaaaccaaacacactcttcctcaaaccaaggaatcctaatt-----aaaaagaaaatgaattcttcaacaatttgttccctgttcctt |
44315386 |
T |
|
| Q |
221 |
ggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
44315387 |
ggtttgatcctaatttctcaatcaccatttgcagcaaatgcaacacttcttggttt |
44315442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 44300693 - 44300876
Alignment:
| Q |
85 |
ttaccttaaattagaatttccgttactataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnn |
184 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
44300693 |
ttaccctaaattagaatttccgttactataaaacactccaacacctatgaaaccaaacacactcc-cgtcaaaccaaggaaccctaatttaaaaaaa--- |
44300788 |
T |
|
| Q |
185 |
nnnntgaattcttcaacaatttgttccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt |
276 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
44300789 |
----tgaattcttcaacaatttgttccatgttccttggtttgatcctaatttctcaatcaccatttgcatcaaatgcaagacttcttggttt |
44300876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 23715400 - 23715149
Alignment:
| Q |
19 |
atctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaac |
118 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
23715400 |
atctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcatttactataaaac |
23715301 |
T |
|
| Q |
119 |
accccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
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| T |
23715300 |
accccaacacctatgaaaccaaacacactcttcctcaaaccaaggaaccctaatt--aaaaaaaaataaatgaattctttaacaatttgttccatgttcc |
23715203 |
T |
|
| Q |
219 |
ttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttg |
272 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
23715202 |
ttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttcttg |
23715149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 23733856 - 23733605
Alignment:
| Q |
19 |
atctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaac |
118 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
23733856 |
atctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcatttactataaaac |
23733757 |
T |
|
| Q |
119 |
accccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
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|
| T |
23733756 |
accccaacacctatgaaaccaaacacactcttcctcaaaccaaggaaccctaatt--aaaaaaaaataaatgaattctttaacaatttgttccatgttcc |
23733659 |
T |
|
| Q |
219 |
ttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttg |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
23733658 |
ttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttcttg |
23733605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 23752313 - 23752060
Alignment:
| Q |
21 |
ctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaacac |
120 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
23752313 |
ctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcctttactataaaacac |
23752214 |
T |
|
| Q |
121 |
cccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatt--tnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
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|
| T |
23752213 |
cccaacacctatgaaaccaaacacactcttcctcaaaccaaggaaccctaattaaaaaaataaaaaaaaatgaattctttaacaatttgttccatgttcc |
23752114 |
T |
|
| Q |
219 |
ttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttg |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
23752113 |
ttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttcttg |
23752060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 23696945 - 23696689
Alignment:
| Q |
19 |
atctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaac |
118 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
23696945 |
atctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcatttactataaaac |
23696846 |
T |
|
| Q |
119 |
accccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatt---tnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgt |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |
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|
| T |
23696845 |
accccaacacctgtgaaaccaaacacactcttcctcaaaccaaggaaccctaattaaaaaaaaaaaaaaaaaatgaattctttaacaatttgttccatgt |
23696746 |
T |
|
| Q |
216 |
tccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttg |
272 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
23696745 |
tccttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttcttg |
23696689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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