View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3520_high_22 (Length: 249)

Name: NF3520_high_22
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3520_high_22
NF3520_high_22
[»] chr4 (13 HSPs)
chr4 (17-221)||(38394823-38395027)
chr4 (68-176)||(44309728-44309833)
chr4 (80-157)||(26165344-26165421)
chr4 (67-138)||(18405719-18405791)
chr4 (78-157)||(7258941-7259019)
chr4 (79-172)||(24805091-24805181)
chr4 (54-112)||(48060008-48060067)
chr4 (67-112)||(12275974-12276020)
chr4 (54-107)||(23686740-23686794)
chr4 (77-107)||(47426309-47426339)
chr4 (54-107)||(50672973-50673027)
chr4 (64-107)||(8322208-8322252)
chr4 (67-106)||(32953489-32953529)
[»] chr8 (6 HSPs)
chr8 (54-157)||(41432690-41432793)
chr8 (64-157)||(15226923-15227017)
chr8 (79-157)||(38437429-38437507)
chr8 (54-158)||(29421506-29421611)
chr8 (67-107)||(26602006-26602046)
chr8 (54-106)||(12650084-12650137)
[»] chr6 (6 HSPs)
chr6 (80-157)||(345848-345926)
chr6 (67-158)||(14781637-14781729)
chr6 (54-146)||(16968874-16968967)
chr6 (67-107)||(6705833-6705874)
chr6 (67-107)||(7053638-7053679)
chr6 (67-107)||(14170975-14171016)
[»] chr2 (11 HSPs)
chr2 (80-180)||(45694164-45694261)
chr2 (80-158)||(41297935-41298013)
chr2 (54-107)||(14253471-14253525)
chr2 (54-107)||(27358031-27358085)
chr2 (54-104)||(42755515-42755565)
chr2 (67-107)||(2521637-2521678)
chr2 (67-107)||(6571649-6571690)
chr2 (67-107)||(21737468-21737509)
chr2 (84-157)||(25455004-25455077)
chr2 (67-107)||(37533914-37533955)
chr2 (67-107)||(39995199-39995240)
[»] chr1 (18 HSPs)
chr1 (80-180)||(52699464-52699561)
chr1 (68-157)||(9011179-9011268)
chr1 (80-158)||(20505006-20505084)
chr1 (80-157)||(24116355-24116430)
chr1 (80-157)||(1007724-1007801)
chr1 (64-154)||(3939500-3939591)
chr1 (78-157)||(13931902-13931981)
chr1 (80-146)||(13653828-13653894)
chr1 (80-157)||(31806774-31806849)
chr1 (80-158)||(37261824-37261902)
chr1 (75-157)||(45772053-45772135)
chr1 (54-107)||(48916090-48916144)
chr1 (67-107)||(6911456-6911497)
chr1 (80-157)||(17475339-17475416)
chr1 (78-107)||(32824897-32824926)
chr1 (77-122)||(37726998-37727043)
chr1 (67-107)||(52630736-52630777)
chr1 (79-107)||(37436689-37436717)
[»] chr5 (13 HSPs)
chr5 (57-157)||(16720231-16720331)
chr5 (67-157)||(3913218-3913308)
chr5 (80-157)||(20962566-20962643)
chr5 (80-150)||(17251788-17251858)
chr5 (67-107)||(28602518-28602558)
chr5 (54-107)||(27480958-27481012)
chr5 (67-112)||(32535899-32535945)
chr5 (79-112)||(6930615-6930648)
chr5 (67-107)||(18412171-18412212)
chr5 (78-107)||(19065573-19065602)
chr5 (80-157)||(28429677-28429754)
chr5 (54-107)||(35348594-35348647)
chr5 (64-107)||(27481316-27481360)
[»] chr7 (11 HSPs)
chr7 (68-157)||(5543149-5543239)
chr7 (80-176)||(31598653-31598746)
chr7 (54-157)||(10902668-10902772)
chr7 (78-157)||(41684040-41684119)
chr7 (54-107)||(37534171-37534225)
chr7 (54-107)||(6656292-6656345)
chr7 (78-107)||(25098043-25098072)
chr7 (67-107)||(33378804-33378845)
chr7 (64-107)||(11000661-11000705)
chr7 (75-107)||(48160659-48160691)
chr7 (67-107)||(48341325-48341365)
[»] chr3 (15 HSPs)
chr3 (54-107)||(12931009-12931062)
chr3 (64-107)||(6832024-6832067)
chr3 (54-102)||(26085665-26085714)
chr3 (54-107)||(32071394-32071447)
chr3 (75-155)||(33647723-33647803)
chr3 (64-107)||(24784167-24784210)
chr3 (79-180)||(28139718-28139816)
chr3 (64-137)||(9320486-9320560)
chr3 (54-107)||(18460888-18460942)
chr3 (75-157)||(28770228-28770310)
chr3 (80-137)||(1246940-1246997)
chr3 (67-107)||(24574537-24574578)
chr3 (67-107)||(31435991-31436032)
chr3 (80-157)||(33497833-33497910)
chr3 (80-157)||(53165743-53165820)
[»] scaffold0238 (1 HSPs)
scaffold0238 (80-158)||(23313-23391)
[»] scaffold0006 (2 HSPs)
scaffold0006 (64-107)||(201884-201928)
scaffold0006 (80-146)||(143589-143655)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 38394823 - 38395027
Alignment:
Q  17 actttattcccaccccttttctttgagagnnnnnnnatatttccataaatattttataccagaaataaaatttagtaaacttgtaacaaacctaaatatg 116  Q
    ||||||||||||||||||||||||| ||        ||||||||| ||||||||||||| || |||||||||||||||||||||||||||| |||  |||    
T  38394823 actttattcccaccccttttctttgggaatttttttatatttccagaaatattttatactaggaataaaatttagtaaacttgtaacaaacataagcatg 38394922  T
Q  117 tgtattcccatcgttttattcttaggaatctacgaatataataacttgaagcaaacgcatcctatatctacgatttctttcgttatatttttcattcagt 216  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  38394923 tatattcccatcgttttattcttaggaatctacggatataataacttgaagcaaacgcaccctatgtctacgatttccttcgttatatttttcattcagt 38395022  T
Q  217 aatga 221  Q
    |||||    
T  38395023 aatga 38395027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 44309728 - 44309833
Alignment:
Q  68 ttttataccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataataacttgaag 167  Q
    |||||||| || ||||||||||||||| |||||||||||| || | |||  |||| | ||||||||||| | || |||||||||||   ||||||||||     
T  44309728 ttttatactaggaataaaatttagtaaccttgtaacaaacatagacatgcatatttctatcgttttattttcagaaatctacgaat---ataacttgaaa 44309824  T
Q  168 caaacgcat 176  Q
    |||||||||    
T  44309825 caaacgcat 44309833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 26165344 - 26165421
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||| |||| ||||| |||   ||  ||||||||| |||||||||| |||||||    
T  26165344 aataaaatttagtaaacttgtaacaaacataaacatgtgcatttttatgattttattctcaggaatctacaaatataa 26165421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 18405719 - 18405791
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattct 138  Q
    |||||||||| ||||||||||||| ||||||||||||||||| || |||||| ||||   |||||||||||||    
T  18405719 attttatacctagaaataaaattttgtaaacttgtaacaaacatagatatgtatatttatatcgttttattct 18405791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 7258941 - 7259019
Alignment:
Q  78 gaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||||||||||||||||||||||  | | |||| |||| | ||| ||||||||| |||||||||| |||||||    
T  7258941 gaaataaaatttagtaaacttgtaacaaacaaagacatgtatatt-ctatcattttattctaaggaatctaccaatataa 7259019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 24805181 - 24805091
Alignment:
Q  79 aaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataataacttgaagcaaac 172  Q
    ||||||||||||||||| ||||||||||| |||| |||| ||||    |||||||||||| || ||||||||||   ||||||||||| |||||    
T  24805181 aaataaaatttagtaaatttgtaacaaacataaacatgtatatttttttcgttttattctcagaaatctacgaa---aataacttgaaacaaac 24805091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 48060008 - 48060067
Alignment:
Q  54 tatttccataaatattttata-ccagaaataaaatttagtaaacttgtaacaaacctaaa 112  Q
    |||| |||||||||||||||| ||| |||||||||||| |||||| ||||||||| ||||    
T  48060008 tattcccataaatattttatatccaaaaataaaatttaataaactcgtaacaaacataaa 48060067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 12276020 - 12275974
Alignment:
Q  67 attttata-ccagaaataaaatttagtaaacttgtaacaaacctaaa 112  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||    
T  12276020 attttatatccaggaataaaatttagtaaacttgtaacaaacataaa 12275974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 23686740 - 23686794
Alignment:
Q  54 tatttccataaatattttatacca-gaaataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||| ||||||||||||||| | |||||| |||||||||||||||||||||    
T  23686740 tattcccagaaatattttataccaaggaataaattttagtaaacttgtaacaaac 23686794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 47426339 - 47426309
Alignment:
Q  77 agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||||||||||||||||||||||||    
T  47426339 agaaataaaatttagtaaacttgtaacaaac 47426309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 50673027 - 50672973
Alignment:
Q  54 tatttccataaatattttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||| ||| |||||||||| || ||||||||||||||||||||||||||||    
T  50673027 tattcccagaaacattttatacccgagaataaaatttagtaaacttgtaacaaac 50672973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 8322208 - 8322252
Alignment:
Q  64 aatattttatacca-gaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||||||| | |||||| |||||||||||||||||||||    
T  8322208 aatattttataccaaggaataaattttagtaaacttgtaacaaac 8322252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 32953489 - 32953529
Alignment:
Q  67 attttataccaga-aataaaatttagtaaacttgtaacaaa 106  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  32953489 attttatacccgagaataaaatttagtaaacttgtaacaaa 32953529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 41432690 - 41432793
Alignment:
Q  54 tatttccataaatattttataccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaat 153  Q
    |||| |||||||  ||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||  ||||||| ||||||    
T  41432690 tattcccataaacgttttataccgggaataaaatttagtaaacttgtaacaaacataaacatgtgtattcctatcattttattcccaggaatccacgaat 41432789  T
Q  154 ataa 157  Q
    ||||    
T  41432790 ataa 41432793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 15226923 - 15227017
Alignment:
Q  64 aatattttataccag-aaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||| || ||||||   ||  ||||||||  ||||||||||||||||||    
T  15226923 aatattttatacccggaaataaaatttagtaaacttgtaacaaacataaacatatgtatttatatgattttattcagaggaatctacgaatataa 15227017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 38437429 - 38437507
Alignment:
Q  79 aaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||| ||||||||||||||||| || |||| |||||||| ||||||||||| | |||||| ||| |||||||    
T  38437429 aaataaaattttgtaaacttgtaacaaacatagatatatgtattcctatcgttttattttcaggaatatacaaatataa 38437507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 29421611 - 29421506
Alignment:
Q  54 tatttccataaatattttataccaga-aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaa 152  Q
    |||| ||| |||||||||||||| || ||||||||||| |||||||||||||||| |||| || | |||| | ||| ||||||||| | ||||| || ||    
T  29421611 tattcccagaaatattttatacccgagaataaaatttaataaacttgtaacaaacataaacatatatatttctatcattttattctcatgaatcaacaaa 29421512  T
Q  153 tataat 158  Q
    ||||||    
T  29421511 tataat 29421506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 26602046 - 26602006
Alignment:
Q  67 attttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  26602046 attttataccaggaataaaatttagtaaacttgtaacaaac 26602006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 12650084 - 12650137
Alignment:
Q  54 tatttccataaatattttatac-cagaaataaaatttagtaaacttgtaacaaa 106  Q
    ||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||    
T  12650084 tatttccatgaatattttatacacagaaataaaatttaataatcttgtaacaaa 12650137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 345926 - 345848
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgtttta-ttcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||| || | ||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  345926 aataaaatttagtaaacttgtaacaaacatagacatgtgtattcctatcattttatttcctaggaatctacgaatataa 345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 14781729 - 14781637
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataat 158  Q
    |||||||||| || |||||||||||||||||||||||||||| ||  ||||| |||||| || |||||| ||  |||||||||||||||||||    
T  14781729 attttatacctaggaataaaatttagtaaacttgtaacaaacatatgtatgtatattcctattgttttaatcgcaggaatctacgaatataat 14781637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 16968874 - 16968967
Alignment:
Q  54 tatttccataaatattttataccaga-aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatc 146  Q
    |||| ||| ||| |||||||||| || |||||||||||||||||||||||||||| || | || |  ||||| ||| ||||||||| |||||||    
T  16968874 tattcccagaaacattttatacccgagaataaaatttagtaaacttgtaacaaacatagacatatagattcctatcattttattctcaggaatc 16968967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 6705874 - 6705833
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  6705874 attttatacctaggaataaaatttagtaaacttgtaacaaac 6705833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 7053679 - 7053638
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  7053679 attttatacccaggaataaaatttagtaaacttgtaacaaac 7053638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 14170975 - 14171016
Alignment:
Q  67 attttata-ccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  14170975 attttatatccaggaataaaatttagtaaacttgtaacaaac 14171016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 45694164 - 45694261
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataataacttgaagcaaacgcatcct 179  Q
    |||||||||||||||||||||||||||| || | ||||||||||| ||| ||||||||  || |||||||||||   |||||||||| |||||||| |||    
T  45694164 aataaaatttagtaaacttgtaacaaacatagacatgtgtattcctatcattttattcccagaaatctacgaat---ataacttgaaacaaacgcaccct 45694260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 41298013 - 41297935
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataat 158  Q
    ||||||||||| ||||||||||||| || ||||| ||| |||| |  || |||||||| || |||||||||||||||||    
T  41298013 aataaaatttaataaacttgtaacatacataaatttgtatatttctttcattttattcataagaatctacgaatataat 41297935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 14253471 - 14253525
Alignment:
Q  54 tatttccataaatattttatac-cagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||||||| ||||||||| | | ||||||||||||||||||||||||||||    
T  14253471 tattcccataaacattttatactcgggaataaaatttagtaaacttgtaacaaac 14253525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 27358085 - 27358031
Alignment:
Q  54 tatttccataaatattttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    |||| |||| ||||||||||||| |  ||||||||||||||||||||||||||||    
T  27358085 tattcccatgaatattttatacctgggaataaaatttagtaaacttgtaacaaac 27358031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 42755515 - 42755565
Alignment:
Q  54 tatttccataaatattttataccagaaataaaatttagtaaacttgtaaca 104  Q
    |||||||| |||||||||||  | ||||||||||||||| |||||||||||    
T  42755515 tatttccaaaaatattttatgtcggaaataaaatttagtcaacttgtaaca 42755565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 2521637 - 2521678
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  2521637 attttatacccaggaataaaatttagtaaacttgtaacaaac 2521678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 6571649 - 6571690
Alignment:
Q  67 attttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  6571649 attttatacctgagaataaaatttagtaaacttgtaacaaac 6571690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 21737509 - 21737468
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  21737509 attttatacccaggaataaaatttagtaaacttgtaacaaac 21737468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 25455004 - 25455077
Alignment:
Q  84 aaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||| || | || ||||||   ||  ||||||||| |||||||||| |||||||    
T  25455004 aaatttagtaaacttgtaacaaacatagacatatgtatttttatgattttattctcaggaatctacaaatataa 25455077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 37533914 - 37533955
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  37533914 attttatacccaggaataaaatttagtaaacttgtaacaaac 37533955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 39995240 - 39995199
Alignment:
Q  67 attttata-ccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  39995240 attttatatccaggaataaaatttagtaaacttgtaacaaac 39995199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 52699561 - 52699464
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataataacttgaagcaaacgcatcct 179  Q
    ||||||||| |||||||||||||||||| ||   ||||||||||| ||| ||||||||  ||||||||||||||   |||||||||| |||||||| |||    
T  52699561 aataaaattcagtaaacttgtaacaaacataggcatgtgtattcctatcattttattcccaggaatctacgaat---ataacttgaaacaaacgcaccct 52699465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 9011268 - 9011179
Alignment:
Q  68 ttttataccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||  |||||||||||||||||||||||| |||| || | |||| |||||| ||| ||||||| | | ||||||||||||||||    
T  9011268 ttttataccgaaaataaaatttagtaaacttgtaataaacatagacatgtatattcctatcattttattttcaagaatctacgaatataa 9011179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 20505084 - 20505006
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataat 158  Q
    |||||||||||||||||||||||||||| || | |||| |||| | ||| ||||||||| || ||||||| ||||||||    
T  20505084 aataaaatttagtaaacttgtaacaaacatagacatgtatatttctatcattttattctcagaaatctacaaatataat 20505006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 24116430 - 24116355
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||||||||||||| |||||| |||| |  | |||| | ||||||||||||| |||||||||| |||||||    
T  24116430 aataaaatttagtaaacttgtgacaaacataaaca--tatatttctatcgttttattctcaggaatctacaaatataa 24116355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 1007724 - 1007801
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||||||||||||||||||||||| | || | |||||  ||| |||||||||  |||||| || |||||||    
T  1007724 aataaaatttagtaaacttgtaacaaacctagacatatatattcatatcattttattctcgggaatcaacaaatataa 1007801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 3939500 - 3939591
Alignment:
Q  64 aatattttatacc-agaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaata 154  Q
    ||||||| ||||| || |||||||||||| ||||||||||||||| |||  |||| |||| | ||| || |||||| ||||||||| |||||    
T  3939500 aatatttcatacctaggaataaaatttagcaaacttgtaacaaacataagcatgtatatttctatcattctattctcaggaatctatgaata 3939591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 13931981 - 13931902
Alignment:
Q  78 gaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||||| ||   || ||||||   ||  |||||||| ||||||||||| |||||||    
T  13931981 gaaataaaatttagtaaacttgtaacaaacataggcatatgtatttttatgattttattcctaggaatctacaaatataa 13931902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 13653828 - 13653894
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatc 146  Q
    |||||||||||||||||||||||||||| || | || | |||| | ||| ||||||||| |||||||    
T  13653828 aataaaatttagtaaacttgtaacaaacgtatacatatatatttctatcattttattctcaggaatc 13653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 31806849 - 31806774
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||  ||||||||| |||  |||| |||| | ||| ||||||||| |||||||||| |||||||    
T  31806849 aataaaatttagtaaac--gtaacaaacataagcatgtatatttctatcattttattctcaggaatctacaaatataa 31806774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 37261824 - 37261902
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataat 158  Q
    ||||||||||| |||||||||||||||| ||   |||| |||| | ||  ||||||||| ||||||||| |||||||||    
T  37261824 aataaaatttaataaacttgtaacaaacatatgcatgtatatttctataattttattctcaggaatctatgaatataat 37261902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 45772053 - 45772135
Alignment:
Q  75 ccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||| ||||||| |||||||| ||||||||  ||||   ||||||||||| | || |||| | ||||||||    
T  45772053 ccagaaataaaatttaataaacttataacaaacataaatatgcatatttatatcgttttattatcagaaatcaatgaatataa 45772135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 48916144 - 48916090
Alignment:
Q  54 tatttccataaatattttataccagaaa-taaaatttagtaaacttgtaacaaac 107  Q
    |||| |||| || |||||||||| |||| ||||||||||||||||||||||||||    
T  48916144 tattcccatgaacattttatacccgaaaataaaatttagtaaacttgtaacaaac 48916090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 6911456 - 6911497
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  6911456 attttatacccaggaataaaatttagtaaacttgtaacaaac 6911497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 17475416 - 17475339
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||||||||||| |||||||| |||| || | |||| | ||||||||||| |  |||| ||| ||||||||    
T  17475416 aataaaatttagtaaacttataacaaacataaacatatatatttctatcgttttattttcgggaacctatgaatataa 17475339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 32824897 - 32824926
Alignment:
Q  78 gaaataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||||||||||||||||||||    
T  32824897 gaaataaaatttagtaaacttgtaacaaac 32824926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 37726998 - 37727043
Alignment:
Q  77 agaaataaaatttagtaaacttgtaacaaacctaaatatgtgtatt 122  Q
    ||||||||||||||| ||||||||||||||| || |||||| ||||    
T  37726998 agaaataaaatttagaaaacttgtaacaaacatagatatgtatatt 37727043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 52630736 - 52630777
Alignment:
Q  67 attttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  52630736 attttatacccgagaataaaatttagtaaacttgtaacaaac 52630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 37436717 - 37436689
Alignment:
Q  79 aaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||||||||||||||||||||||    
T  37436717 aaataaaatttagtaaacttgtaacaaac 37436689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 16720331 - 16720231
Alignment:
Q  57 ttccataaatattttataccaga-aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatat 155  Q
    ||||| |||||||||||||| || |||||||||||||||||||| ||||||| ||  ||||| |||| | |||  ||||||| |||||||||||||||||    
T  16720331 ttccaaaaatattttatacccgataataaaatttagtaaacttgcaacaaacatatgtatgtatatttctatc-atttattcataggaatctacgaatat 16720233  T
Q  156 aa 157  Q
    ||    
T  16720232 aa 16720231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 3913308 - 3913218
Alignment:
Q  67 attttataccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||| | |||||||||||||||| |||||| |||| || | |||| |||| | ||||||||||||  | ||||||||||||||||    
T  3913308 attttatacctggaataaaatttagtaaatttgtaataaacatacacatgtatatttctatcgttttattcccaagaatctacgaatataa 3913218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 20962566 - 20962643
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||| ||   | ||||||||| ||| ||||||||  | ||||||||||||||||    
T  20962566 aataaaatttagtaaacttgtaacaaacataggcacgtgtattcctatcattttattcccaagaatctacgaatataa 20962643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 17251788 - 17251858
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacg 150  Q
    |||||||||||||||| || |||||||| |||| |||| |||| | ||| ||||||||| |||||||||||    
T  17251788 aataaaatttagtaaaattataacaaacataaacatgtatatttctatcattttattctcaggaatctacg 17251858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 28602518 - 28602558
Alignment:
Q  67 attttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  28602518 attttataccgggaataaaatttagtaaacttgtaacaaac 28602558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 27480958 - 27481012
Alignment:
Q  54 tatttccataaatattttatac-cagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||| |||| || ||||||||| ||| ||||||||||||||||||||||||||||    
T  27480958 tattcccatgaacattttatacacaggaataaaatttagtaaacttgtaacaaac 27481012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 32535899 - 32535945
Alignment:
Q  67 attttatacca-gaaataaaatttagtaaacttgtaacaaacctaaa 112  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  32535899 attttataccaagaaataaattttagtaaacttgtaacaaacataaa 32535945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 6930615 - 6930648
Alignment:
Q  79 aaataaaatttagtaaacttgtaacaaacctaaa 112  Q
    ||||||||||||||||||||||||||||| ||||    
T  6930615 aaataaaatttagtaaacttgtaacaaacataaa 6930648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 18412171 - 18412212
Alignment:
Q  67 attttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  18412171 attttatacccgagaataaaatttagtaaacttgtaacaaac 18412212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 19065602 - 19065573
Alignment:
Q  78 gaaataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||||||||||||||||||||    
T  19065602 gaaataaaatttagtaaacttgtaacaaac 19065573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 28429677 - 28429754
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||  ||   |||| |||| | ||| |||||||  || ||||||||||||||||    
T  28429677 aataaaatttagtaaacttgtaacaaatataggcatgtatatttctatcattttatttctaagaatctacgaatataa 28429754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 35348647 - 35348594
Alignment:
Q  54 tatttccataaatattttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||| ||| ||||||||||  ||||| |||||||||||||||||||||||    
T  35348647 tattcccaaaaacattttatacccaaaatacaatttagtaaacttgtaacaaac 35348594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 27481316 - 27481360
Alignment:
Q  64 aatattttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||    
T  27481316 aatattttatacccgggaataaaatttagtaaacttgtaacaaac 27481360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 5543239 - 5543149
Alignment:
Q  68 ttttataccaga-aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||| |||| ||||   ||||||||||||  | ||||||||||| ||||    
T  5543239 ttttatacgagagaataaaatttagtaaacttgtaacaaacataaacatgtatatttatatcgttttattcccaagaatctacgaaaataa 5543149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 31598653 - 31598746
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataataacttgaagcaaacgcat 176  Q
    |||||||||||||||||||||||||||  |||  || |||||| | ||||||||||| | ||||||||| ||||   |||||||||| |||||||||    
T  31598653 aataaaatttagtaaacttgtaacaaatataagcatttgtatttctatcgttttattttcaggaatctatgaat---ataacttgaaacaaacgcat 31598746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 10902772 - 10902668
Alignment:
Q  54 tatttccataaatattttata-ccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaa 152  Q
    |||| ||| ||| |||||||| ||| ||||||||||||||||||||||||||||| || | |||| |||| | ||| ||||||| |||  ||||||| ||    
T  10902772 tattcccaaaaacattttatatccaaaaataaaatttagtaaacttgtaacaaacatagacatgtatatttctatcattttatttttaaaaatctactaa 10902673  T
Q  153 tataa 157  Q
    |||||    
T  10902672 tataa 10902668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 41684119 - 41684040
Alignment:
Q  78 gaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||||| |||| || | |||| | ||| | ||||||| ||||||| || |||||||    
T  41684119 gaaataaaatttagtaaacttgtaacaaacataaacatatatatttctatcatattattctcaggaatcaacaaatataa 41684040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37534225 - 37534171
Alignment:
Q  54 tatttccataaatattttataccag-aaataaaatttagtaaacttgtaacaaac 107  Q
    |||| |||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  37534225 tattcccataaatattttatacccggaaataaaagttagtaaacttgtaacaaac 37534171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 6656345 - 6656292
Alignment:
Q  54 tatttccataaatattttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||| |||||||||||||  ||||  ||||||||||||||| ||||||||    
T  6656345 tatttccagaaatattttatactcgaaaataaatttagtaaacttataacaaac 6656292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 25098043 - 25098072
Alignment:
Q  78 gaaataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||||||||||||||||||||    
T  25098043 gaaataaaatttagtaaacttgtaacaaac 25098072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 33378804 - 33378845
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  33378804 attttatacccaggaataaaatttagtaaacttgtaacaaac 33378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 11000661 - 11000705
Alignment:
Q  64 aatattttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||    
T  11000661 aatattttatacccgggaataaaatttagtaaacttgtaacaaac 11000705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 48160691 - 48160659
Alignment:
Q  75 ccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||||||||||||||||||||||||||||    
T  48160691 ccaggaataaaatttagtaaacttgtaacaaac 48160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 48341325 - 48341365
Alignment:
Q  67 attttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  48341325 attttataccgggaataaaatttaataaacttgtaacaaac 48341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 12931062 - 12931009
Alignment:
Q  54 tatttccataaatattttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  12931062 tattcccataaacattttataccgggaataaaatttagtaaacttgtaacaaac 12931009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 6832067 - 6832024
Alignment:
Q  64 aatattttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  6832067 aatattttatacctggaataaaatttagtaaacttgtaacaaac 6832024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 26085665 - 26085714
Alignment:
Q  54 tatttccataaatattttatacc-agaaataaaatttagtaaacttgtaa 102  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  26085665 tattttcataaatattttatacccaaaaataaaatttagtaaacttgtaa 26085714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 32071394 - 32071447
Alignment:
Q  54 tatttccataaatattttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||| || |||| |||||  |||||||||||||||||||||||||||||    
T  32071394 tatttccatgaacatttcatacccaaaataaaatttagtaaacttgtaacaaac 32071447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 33647803 - 33647723
Alignment:
Q  75 ccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatat 155  Q
    |||| |||||||||||||||||||||||||||| || | |||| |||| | | ||||||||||    ||||||||||||||    
T  33647803 ccaggaataaaatttagtaaacttgtaacaaacatagagatgtatatttctaacgttttattcccgagaatctacgaatat 33647723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 24784167 - 24784210
Alignment:
Q  64 aatattttataccagaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||||  || ||||||||||||||||||||||||||||    
T  24784167 aatattttatattaggaataaaatttagtaaacttgtaacaaac 24784210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 28139816 - 28139718
Alignment:
Q  79 aaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataataacttgaagcaaacgcatcc 178  Q
    |||||||||||| ||| |||||||||||| |||  |||| |||| | ||| |||||||| || |||| |||||||   |||||||||| |||||||| ||    
T  28139816 aaataaaatttactaatcttgtaacaaacataagcatgtatatttctatctttttattcctaagaatatacgaat---ataacttgaaacaaacgcaccc 28139720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 9320560 - 9320486
Alignment:
Q  64 aatattttataccaga-aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattc 137  Q
    ||||||||||||| |  |||||||||||||||||||||||||||| ||| ||| |  ||||| ||| ||||||||    
T  9320560 aatattttatacccgggaataaaatttagtaaacttgtaacaaacataagtatatacattcctatcattttattc 9320486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18460888 - 18460942
Alignment:
Q  54 tatttccataaatattttataccaga-aataaaatttagtaaacttgtaacaaac 107  Q
    |||| ||| ||| ||||||||||| | ||||||||||||||||||||||||||||    
T  18460888 tattcccagaaacattttataccaaagaataaaatttagtaaacttgtaacaaac 18460942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 28770310 - 28770228
Alignment:
Q  75 ccagaaataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||| ||| |||||||||||||||||| ||||| || | |||  |||| | ||| ||||||||  ||||||||||||||||||    
T  28770310 ccaggaatcaaatttagtaaacttgtaccaaacatagacatgcatatttctatctttttattcccaggaatctacgaatataa 28770228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 1246997 - 1246940
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattc 137  Q
    |||||||||||||||||||||||||||| |||  || |||||| | ||| ||||||||    
T  1246997 aataaaatttagtaaacttgtaacaaacataagcatatgtatttctatcattttattc 1246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 24574537 - 24574578
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  24574537 attttatacccaggaataaaatttagtaaacttgtaacaaac 24574578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 31436032 - 31435991
Alignment:
Q  67 attttatacc-agaaataaaatttagtaaacttgtaacaaac 107  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  31436032 attttatacccaggaataaaatttagtaaacttgtaacaaac 31435991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 33497833 - 33497910
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    ||||||||||| |||| ||||||||||  |||  |||| |||| | ||| ||||||| ||||||||||||||| ||||    
T  33497833 aataaaatttaataaatttgtaacaaatataagcatgtatatttctatcattttatttttaggaatctacgaaaataa 33497910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 53165820 - 53165743
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataa 157  Q
    |||||||||||||||||||||||||||| |||  || | |||||| ||| |||||||  | |||||| || |||||||    
T  53165820 aataaaatttagtaaacttgtaacaaacataagcatatatattcctatcattttatttatgggaatcaacaaatataa 53165743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 23391 - 23313
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatctacgaatataat 158  Q
    |||||||||||||||||||||||||||| || | |||| |||| | ||  ||||||||| || ||||||| ||||||||    
T  23391 aataaaatttagtaaacttgtaacaaacatagacatgtatatttctataattttattctcagaaatctacaaatataat 23313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 201884 - 201928
Alignment:
Q  64 aatattttataccag-aaataaaatttagtaaacttgtaacaaac 107  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  201884 aatattttatacccggaaataaaatttagtaaacttgtaacaaac 201928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 143589 - 143655
Alignment:
Q  80 aataaaatttagtaaacttgtaacaaacctaaatatgtgtattcccatcgttttattcttaggaatc 146  Q
    |||||||||||||||||||||||||||| || | || | |||| | ||| ||||||||| |||||||    
T  143589 aataaaatttagtaaacttgtaacaaacgtatacatatatatttctatcattttattctcaggaatc 143655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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