View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3520_high_23 (Length: 241)

Name: NF3520_high_23
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3520_high_23
NF3520_high_23
[»] chr8 (2 HSPs)
chr8 (1-238)||(11402053-11402290)
chr8 (31-124)||(11403129-11403222)
[»] chr6 (2 HSPs)
chr6 (162-237)||(29303583-29303658)
chr6 (35-129)||(29303709-29303803)
[»] chr5 (4 HSPs)
chr5 (162-237)||(12529384-12529459)
chr5 (162-237)||(35841563-35841638)
chr5 (35-129)||(12529239-12529333)
chr5 (35-129)||(35841689-35841783)
[»] chr4 (5 HSPs)
chr4 (162-237)||(27730597-27730672)
chr4 (162-237)||(45965850-45965925)
chr4 (35-129)||(27730452-27730546)
chr4 (35-129)||(45965976-45966070)
chr4 (162-228)||(24146599-24146665)
[»] chr1 (3 HSPs)
chr1 (162-237)||(29282638-29282713)
chr1 (162-237)||(49220633-49220708)
chr1 (35-129)||(29282493-29282587)
[»] chr2 (4 HSPs)
chr2 (35-129)||(42300562-42300656)
chr2 (162-237)||(42913497-42913572)
chr2 (35-129)||(42913352-42913446)
chr2 (162-237)||(42300436-42300511)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11402290 - 11402053
Alignment:
Q  1 ttcccttcaagatatctatatcgtggagcaccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgtt 100  Q
    |||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402290 ttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgtt 11402191  T
Q  101 atccataatattttctccatacacgctcaaattttgtaacgggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacaga 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402190 atccataatattttctccatacacgctcaaattttgtaacaggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacaga 11402091  T
Q  201 gattgcagtttttatttcggagttttctctgctccttc 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11402090 gattgcagtttttatttcggagttttctctactccttc 11402053  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 11403129 - 11403222
Alignment:
Q  31 ccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 124  Q
    ||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11403129 ccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 29303658 - 29303583
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 29303583  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 29303803 - 29303709
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  29303803 tatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 29303709  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 12529384 - 12529459
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 12529459  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 35841638 - 35841563
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 35841563  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 12529239 - 12529333
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  12529239 tatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 12529333  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 35841783 - 35841689
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  35841783 tatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 35841689  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 27730597 - 27730672
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 27730672  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 45965925 - 45965850
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 45965850  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 27730452 - 27730546
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  27730452 tatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 27730546  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 45966070 - 45965976
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  45966070 tatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 45965976  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 24146665 - 24146599
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttct 228  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||    
T  24146665 gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttct 24146599  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 29282638 - 29282713
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 29282713  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 49220633 - 49220708
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctt 49220708  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 29282493 - 29282587
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  29282493 tatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 29282587  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 42300656 - 42300562
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | |||||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  42300656 tatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 42300562  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 42913497 - 42913572
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| ||||||| ||||||    
T  42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcctt 42913572  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 42913352 - 42913446
Alignment:
Q  35 tatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctca 129  Q
    ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  42913352 tatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 42913446  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 42300511 - 42300436
Alignment:
Q  162 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcctt 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || ||||||| ||||||    
T  42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcctt 42300436  T

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