View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_high_4 (Length: 597)
Name: NF3520_high_4
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 2384740 - 2384352
Alignment:
| Q |
8 |
cgaagaatatgagaacaatgggaatagcattgtatactagtgttttcggagttggaagctttgttagtgcattgatgattacacttgttgaagtttacac |
107 |
Q |
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| T |
2384740 |
cgaagaatatgagaacaatgggaattgcattgtatacaagtgtttttggagttggaagctttgttagtgcattgatgattacacttgttgaagtatatac |
2384641 |
T |
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| Q |
108 |
aagctcaaaaggaacaccaagttggttttctgatgatatggtcgaggcacgtttggataattactattggcttctagcttggttaagttcaattagctta |
207 |
Q |
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| T |
2384640 |
aagttcaaaaggaacaccaagttggttttctgatgatatggtcgaggcgcgtttggataattactattggcttctagcttggttaagttcaattagctta |
2384541 |
T |
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| Q |
208 |
ttgttgtatacactattgtgtaaatattactataataagagtgaatcagatagttaaaacttagttttannnnnnnctgatatagttttcaagtgtaatt |
307 |
Q |
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| T |
2384540 |
ttgttgtatacactattgtgtaaatattactataataagagtgaatcagatagttaaaactgagttttatttttttctgatatagttttcaagtgtaatt |
2384441 |
T |
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| Q |
308 |
ttatcacaaagtttgtggaacaagttaccattatatcatattaatataccagtaattgtatgatgttctttttgtaagaaggtaaactg |
396 |
Q |
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| T |
2384440 |
ttatcacaaagtttgtggaacaagttaccattatatcatattaatataccagtaattgtatgatgttctttttgtaagaaggtaaactg |
2384352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 405 - 582
Target Start/End: Complemental strand, 2384320 - 2384143
Alignment:
| Q |
405 |
taagatttaacacattcttatcctttttatgtacaattttaccttttcaatttggatttaattcatatatacacggttagtgaaaaagctttttacacta |
504 |
Q |
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| T |
2384320 |
taagatttaacacattcttatcctttttatgtacaattttaccttttcaatttggatttaattcatatatacacggttagtgaaaaagctttttacacta |
2384221 |
T |
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| Q |
505 |
tcgattaatcataactgtctgatcattagaacgtttgactttttatcataaccacttcgaaagccacacacgtaattg |
582 |
Q |
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| T |
2384220 |
tcgattaatcataactgtctgatcattagaacgtttgactttttatcataaccacttcgaaagccacacacgtaattg |
2384143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 1900480 - 1900411
Alignment:
| Q |
494 |
tttttacactatcgattaatcataactgtc-tgatcattag-aacgtttgactttttatcataaccacttc |
562 |
Q |
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| T |
1900480 |
tttttacactatcggttaatcataactgtcttgatcaatagaaacatttgac-ttttatcataactacttc |
1900411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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