View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3520_high_8 (Length: 425)

Name: NF3520_high_8
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3520_high_8
NF3520_high_8
[»] chr2 (7 HSPs)
chr2 (1-204)||(12798696-12798899)
chr2 (218-292)||(29108797-29108871)
chr2 (218-292)||(35470332-35470406)
chr2 (248-292)||(12798966-12799010)
chr2 (218-292)||(15658769-15658843)
chr2 (251-292)||(32143615-32143656)
chr2 (220-292)||(8329623-8329694)
[»] chr5 (7 HSPs)
chr5 (218-292)||(29144394-29144467)
chr5 (245-292)||(24181449-24181496)
chr5 (245-292)||(26296455-26296502)
chr5 (245-292)||(22732006-22732053)
chr5 (246-292)||(7313277-7313323)
chr5 (243-272)||(32310887-32310916)
chr5 (219-255)||(20175228-20175264)
[»] scaffold0007 (1 HSPs)
scaffold0007 (239-292)||(185518-185571)
[»] chr3 (6 HSPs)
chr3 (220-292)||(55142364-55142436)
chr3 (220-287)||(50662504-50662571)
chr3 (245-292)||(53653110-53653157)
chr3 (253-292)||(40892798-40892837)
chr3 (243-292)||(31064592-31064641)
chr3 (248-292)||(38832955-38832999)
[»] chr8 (10 HSPs)
chr8 (218-292)||(44362259-44362333)
chr8 (244-291)||(26491449-26491496)
chr8 (218-292)||(7662328-7662402)
chr8 (245-292)||(45114681-45114728)
chr8 (218-292)||(8457571-8457645)
chr8 (245-287)||(42563188-42563230)
chr8 (218-275)||(23722248-23722305)
chr8 (220-292)||(18087264-18087334)
chr8 (218-254)||(24261365-24261401)
chr8 (245-289)||(30157855-30157899)
[»] chr7 (5 HSPs)
chr7 (236-292)||(24495335-24495391)
chr7 (219-290)||(9047066-9047137)
chr7 (245-292)||(26453914-26453961)
chr7 (244-289)||(8919379-8919424)
chr7 (245-285)||(30898124-30898164)
[»] chr6 (4 HSPs)
chr6 (233-292)||(31955638-31955697)
chr6 (243-292)||(2656424-2656473)
chr6 (239-292)||(21608225-21608278)
chr6 (220-292)||(29608421-29608493)
[»] chr4 (11 HSPs)
chr4 (245-292)||(47089207-47089254)
chr4 (245-292)||(49081323-49081370)
chr4 (243-289)||(1955284-1955330)
chr4 (220-292)||(7633203-7633274)
chr4 (245-292)||(38609093-38609140)
chr4 (243-290)||(48743459-48743506)
chr4 (218-292)||(26194508-26194582)
chr4 (218-292)||(33033265-33033337)
chr4 (218-292)||(47742812-47742884)
chr4 (218-291)||(42274358-42274430)
chr4 (218-254)||(31314354-31314390)
[»] chr1 (4 HSPs)
chr1 (245-292)||(27919167-27919214)
chr1 (251-292)||(42887975-42888016)
chr1 (248-292)||(43638412-43638456)
chr1 (248-292)||(6395464-6395508)
[»] scaffold0603 (1 HSPs)
scaffold0603 (218-292)||(6930-7004)
[»] scaffold0735 (1 HSPs)
scaffold0735 (251-292)||(928-969)
[»] scaffold0191 (1 HSPs)
scaffold0191 (245-292)||(4538-4585)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12798696 - 12798899
Alignment:
Q  1 gaaatcttagtagcaaatctgtggtcctgtctttcttaattctaggagagtggtttttaattaattaagagagcaatgtctagaaagttctcaaatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12798696 gaaatcttagtagcaaatctgtggtcctgtctttcttaattctaggagagtggtttttaattaattaagagagcaatgtctagaaagttctcaaatttgg 12798795  T
Q  101 catcttacatggaagaagtgaacgaacaataaagtatgtttggttttggcagcacatgtcaagtgagtaaagacacccgtgactcgtgacacgaggccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12798796 catcttacatggaagaagtgaacgaacaataaagtatgtttggttttggcagcacatgtcaagtgagtaaagacacccgtgactcgtgacacgaggccaa 12798895  T
Q  201 acca 204  Q
    ||||    
T  12798896 acca 12798899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 29108871 - 29108797
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||   ||| |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  29108871 gggaaatgttaatcggtgctcccgcgacactggttaaggaattataaaaggaaatattttcttgaaaattgtgta 29108797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 35470406 - 35470332
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| ||||| ||||| | |||||||||| ||||||| |||||||||||||  ||||||||||||||    
T  35470406 gggaaatgttaaccggtgcctccggggcactggttaaggaattattaaaggaaatatttccttgaaaattgtgta 35470332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 12798966 - 12799010
Alignment:
Q  248 tggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  12798966 tggttaaagaattataaaaggaaatatattatcgaaaattgtgta 12799010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 15658769 - 15658843
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||||| |||  |||| | ||||| |||| ||||||| ||||||||||||| |||| ||||||||||    
T  15658769 gggaaatgttaatcagtgcatccggggcactgattaaggaattattaaaggaaatatttcattggaaattgtgta 15658843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 32143615 - 32143656
Alignment:
Q  251 ttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||    
T  32143615 ttaaagaattagaaaagaaaatattttcttgaaaattgtgta 32143656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 8329623 - 8329694
Alignment:
Q  220 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||||||| ||||| || ||| ||||| |||||||| ||||||||||| | ||| ||||| ||||    
T  8329623 gaaatgttaatcggtg-ctccgggatacttgttaaggaattatataaggaaatattattttggaaattatgta 8329694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 29144467 - 29144394
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||| ||||||||| |||||||||| |||||  ||||||||||||||||||||| ||| ||||||||||    
T  29144467 gggaaatgttgatcggtgtc-ccgagacactagttaagaaattataaaaggaaatatttttttggaaattgtgta 29144394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 24181449 - 24181496
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  24181449 cactggttaaggaattataaaaggaaatattgtattgaaaattgtgta 24181496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 26296502 - 26296455
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26296502 cactggttaaagaattataaaaggaaatattgtattggaaattgtgta 26296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 22732053 - 22732006
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  22732053 cactagttaaagaatcataaaaggaaatattttcttgaaaattgtgta 22732006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 7313323 - 7313277
Alignment:
Q  246 actggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||||||||    
T  7313323 actggataaggaattataaaaagaaatattttcttgaaaattgtgta 7313277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 32310916 - 32310887
Alignment:
Q  243 gacactggttaaagaattataaaaggaaat 272  Q
    ||||||||||||||||||||||||||||||    
T  32310916 gacactggttaaagaattataaaaggaaat 32310887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 20175228 - 20175264
Alignment:
Q  219 ggaaatgttaatcggtgtctccgagacactggttaaa 255  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  20175228 ggaaatgctaaccggtgtctccgagacactggttaaa 20175264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 185571 - 185518
Alignment:
Q  239 ccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  185571 ccgagacactggttaaggaattataaaagaaaatattgtattgaaaattgtgta 185518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 55142436 - 55142364
Alignment:
Q  220 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||| ||||||| |||  | |||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  55142436 gaaatgttaaccggtgtccccggaatactggttaaagaattataaaagaaaatatttttttggaaattgtgta 55142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 50662571 - 50662504
Alignment:
Q  220 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaatt 287  Q
    |||||||||| ||||||||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||    
T  50662571 gaaatgttaaccggtgtctcggaggcactggttaaggaattataaaataaaatattatattggaaatt 50662504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 53653110 - 53653157
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||    
T  53653110 cactggttaaagaattataaaagaaaattttatattgaaaattgtgta 53653157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 40892798 - 40892837
Alignment:
Q  253 aaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  40892798 aaagaattataaaaggaaatattttcttggaaattgtgta 40892837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 31064641 - 31064592
Alignment:
Q  243 gacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||| ||||| ||||||||||| |||| ||||| ||||||||||||||    
T  31064641 gacactagttaaggaattataaaaagaaacatttttttgaaaattgtgta 31064592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 38832955 - 38832999
Alignment:
Q  248 tggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||  ||||||||||||||||||| ||||||||||| ||||    
T  38832955 tggttaagaaattataaaaggaaatattgtattgaaaattatgta 38832999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 44362259 - 44362333
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| |  |||||||| | || ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  44362259 gggaaatgttaaccaatgtctccggggcagtggttaaggaattataaaaagaaatattgtattgaaaattgtgta 44362333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 26491449 - 26491496
Alignment:
Q  244 acactggttaaagaattataaaaggaaatattttattgaaaattgtgt 291  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  26491449 acactagttaaagaattataaaaggaaatattgtattggaaattgtgt 26491496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 7662402 - 7662328
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| ||||| ||| |||  |||||||||  |||||| |||||||||||||| ||| ||||||||||    
T  7662402 gggaaatgttaaccggtgcctctgaggtactggttaagaaattattaaaggaaatatttttttggaaattgtgta 7662328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 45114681 - 45114728
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||| ||||||||||||||||| ||||| |||| ||||||||||||||    
T  45114681 cacttgttaaagaattataaaatgaaatttttttttgaaaattgtgta 45114728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 8457645 - 8457571
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| | ||| | ||| | ||||| |||| |||||| ||||||||||||||| ||| ||||||||||    
T  8457645 gggaaatgttaaccagtgcccccgggccactgattaaggaattagaaaaggaaatattttcttggaaattgtgta 8457571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 42563188 - 42563230
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaatt 287  Q
    |||| ||||| |||||||||||||||||||| |||||||||||    
T  42563188 cactagttaaggaattataaaaggaaatattgtattgaaaatt 42563230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 23722248 - 23722305
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatatt 275  Q
    |||||||||||| ||||| | ||| | |||||||||| |||||| |||||||||||||    
T  23722248 gggaaatgttaaccggtgcccccggggcactggttaaggaattagaaaaggaaatatt 23722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 18087334 - 18087264
Alignment:
Q  220 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| ||||| ||| | |||| ||||| |||| ||||||||||||||| | ||||||||||||||    
T  18087334 gaaatgttaatcagtgtc-ccggggcacttgttaaggaat-ataaaaggaaatattctcttgaaaattgtgta 18087264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 24261365 - 24261401
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaa 254  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  24261365 gggaaatgttaatcggtgtctctgaggcactggttaa 24261401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 30157899 - 30157855
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgt 289  Q
    |||| ||||| ||||||| |||||||||||||| |||||||||||    
T  30157899 cacttgttaatgaattattaaaggaaatattttcttgaaaattgt 30157855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 24495391 - 24495335
Alignment:
Q  236 tctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||| |||| |||||||||||||||||| ||||||| | ||||||||||||||    
T  24495391 tctccgaggcacttgttaaagaattataaaagaaaatattatcttgaaaattgtgta 24495335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 9047066 - 9047137
Alignment:
Q  219 ggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtg 290  Q
    ||||||||||| |  |||| ||| |||||||||||| |||| |||||||||||| || ||||||||||||||    
T  9047066 ggaaatgttaaccaatgtccccgggacactggttaaggaatcataaaaggaaattttgtattgaaaattgtg 9047137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 26453961 - 26453914
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  26453961 cactagttaaggaattataaaaggaaatgttttatcgaaaattgtgta 26453914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 8919379 - 8919424
Alignment:
Q  244 acactggttaaagaattataaaaggaaatattttattgaaaattgt 289  Q
    ||||||||||| |||||||||||||||||  ||| |||||||||||    
T  8919379 acactggttaaggaattataaaaggaaatgattttttgaaaattgt 8919424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 30898164 - 30898124
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaa 285  Q
    |||| ||||| |||||||||||||||||||||| |||||||    
T  30898164 cacttgttaaggaattataaaaggaaatattttcttgaaaa 30898124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 31955638 - 31955697
Alignment:
Q  233 gtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||| || ||||||||||||  ||||||||||||||||||||  ||||||||||||||    
T  31955638 gtgtctgcgggacactggttaataaattataaaaggaaatatttatttgaaaattgtgta 31955697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 2656424 - 2656473
Alignment:
Q  243 gacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  2656424 gacactggttaaggaattataaaagaaaatattatattggaaattgtgta 2656473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 21608278 - 21608225
Alignment:
Q  239 ccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||  ||||||||||| |||| |||| || |||||||||||    
T  21608278 ccgagacactggttaagaaattataaaagaaaattttttcttcaaaattgtgta 21608225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 29608421 - 29608493
Alignment:
Q  220 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||| ||||||| ||||||| ||||||| |||||  ||||| |||||||||||| || ||| ||||| ||||    
T  29608421 gaaattttaatcgttgtctcctagacacttgttaagaaattaaaaaaggaaatatatttttggaaattatgta 29608493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 47089207 - 47089254
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  47089207 cactggttaaggaattataaaaggaaatgttttcttgaaaattgtgta 47089254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 49081370 - 49081323
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  49081370 cactgattaaagaattagaaaaggaaatatttttttgaaaattgtgta 49081323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 1955284 - 1955330
Alignment:
Q  243 gacactggttaaagaattataaaaggaaatattttattgaaaattgt 289  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||    
T  1955284 gacattggttaaagaattataaaagaaaatattgtattgaaaattgt 1955330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 7633274 - 7633203
Alignment:
Q  220 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||| ||||| ||||| |  ||||||||| |||||||||||||||||  ||| ||||||||||||||    
T  7633274 gaaatgttaaccggtg-ctccgggggactggttaaggaattataaaaggaaatgattttttgaaaattgtgta 7633203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 38609093 - 38609140
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||| ||||||||||||||||| |||| | ||||||||||||    
T  38609093 cactggttaaggaattataaaaggaaatgttttctcgaaaattgtgta 38609140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 48743459 - 48743506
Alignment:
Q  243 gacactggttaaagaattataaaaggaaatattttattgaaaattgtg 290  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||||||||    
T  48743459 gacactggttaagaaattataaaaggaaatattgtattggaaattgtg 48743506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 26194508 - 26194582
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||   ||||||||| | |||| ||||| ||||||||||| |||||||| | ||| ||||||||||    
T  26194508 gggaaatgttaagaagtgtctccggggcacttgttaaggaattataaaatgaaatattatcttgtaaattgtgta 26194582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 33033337 - 33033265
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| ||||| |||| |||||||| |||  |||||||||||| ||||||||| ||| ||||||||||    
T  33033337 gggaaatgttaaccggtg-ctccaagacactgattat-gaattataaaagaaaatattttcttggaaattgtgta 33033265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 47742884 - 47742812
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||| || ||| |||| ||||||| |||||||||||||||||||| | ||| || |||||||    
T  47742884 gggaaatgttaatcggtatc-ccg-gacattggttaaggaattataaaaggaaatattatcttggaatttgtgta 47742812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 42274430 - 42274358
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgt 291  Q
    ||||||||||||  ||||||| || | || |||||||  ||||| ||||||||||||||| |||||||||||||    
T  42274430 gggaaatgttaacaggtgtcttcggg-cattggttaagtaattagaaaaggaaatatttttttgaaaattgtgt 42274358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 31314354 - 31314390
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaa 254  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  31314354 gggaaatgttaatcggtgtcttcgagatactggttaa 31314390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 27919214 - 27919167
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  27919214 cacttgttaaagaattataaaaggaaatattttcttgaaaattatgta 27919167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 42887975 - 42888016
Alignment:
Q  251 ttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  42887975 ttaaagaattataaaaggaaatattttcttgaaaattatgta 42888016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 43638456 - 43638412
Alignment:
Q  248 tggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||    
T  43638456 tggttaaggaattataaaaggaaatattgtcttgaaaattgtgta 43638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 6395464 - 6395508
Alignment:
Q  248 tggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||| ||||||| |||| ||||||||| ||||||||||||||    
T  6395464 tggttaaggaattattaaagaaaatatttttttgaaaattgtgta 6395508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 6930 - 7004
Alignment:
Q  218 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    |||||||||||| |||||  |||| |||||| ||||| ||||| |||||||||||  ||| ||||||||||||||    
T  6930 gggaaatgttaaccggtgattccgggacactagttaaggaattgtaaaaggaaatgatttcttgaaaattgtgta 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 928 - 969
Alignment:
Q  251 ttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  928 ttaaagaattataaaaggaaatattttcttgaaaattatgta 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 4538 - 4585
Alignment:
Q  245 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 292  Q
    ||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  4538 cactgattaaagaataataaaatgaaatattgtattgaaaattgtgta 4585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University