View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3520_high_9 (Length: 422)

Name: NF3520_high_9
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3520_high_9
NF3520_high_9
[»] chr5 (10 HSPs)
chr5 (20-252)||(27593249-27593483)
chr5 (20-223)||(23570218-23570404)
chr5 (106-223)||(30326698-30326818)
chr5 (21-223)||(9025260-9025470)
chr5 (315-417)||(30326909-30327011)
chr5 (328-415)||(23570509-23570596)
chr5 (21-87)||(30326632-30326698)
chr5 (105-142)||(36392032-36392069)
chr5 (120-163)||(7744136-7744179)
chr5 (21-56)||(19319245-19319280)
[»] chr3 (16 HSPs)
chr3 (20-252)||(39184398-39184632)
chr3 (20-223)||(40058039-40058244)
chr3 (20-223)||(14233098-14233302)
chr3 (315-414)||(40057847-40057946)
chr3 (315-414)||(39184236-39184335)
chr3 (120-223)||(2251242-2251347)
chr3 (20-194)||(20790586-20790743)
chr3 (315-417)||(2251048-2251150)
chr3 (315-417)||(20790385-20790487)
chr3 (328-417)||(14045462-14045551)
chr3 (73-205)||(52753927-52754060)
chr3 (20-87)||(2251393-2251460)
chr3 (21-142)||(50241830-50241958)
chr3 (190-223)||(50241787-50241820)
chr3 (179-223)||(52077-52121)
chr3 (179-223)||(11655163-11655207)
[»] chr8 (10 HSPs)
chr8 (20-252)||(45245551-45245785)
chr8 (20-223)||(23684346-23684551)
chr8 (20-223)||(361315-361501)
chr8 (315-414)||(45245389-45245488)
chr8 (75-223)||(41526661-41526810)
chr8 (315-414)||(40886933-40887028)
chr8 (315-413)||(361124-361222)
chr8 (108-211)||(10279928-10280034)
chr8 (105-155)||(14714890-14714940)
chr8 (107-155)||(34802887-34802935)
[»] chr1 (12 HSPs)
chr1 (27-223)||(15530440-15530638)
chr1 (20-223)||(22539604-22539801)
chr1 (106-223)||(21467389-21467508)
chr1 (106-223)||(19102420-19102539)
chr1 (315-417)||(19102631-19102733)
chr1 (60-223)||(49882109-49882273)
chr1 (20-87)||(19102353-19102420)
chr1 (20-87)||(21467322-21467389)
chr1 (356-417)||(21467631-21467692)
chr1 (105-155)||(28961956-28962006)
chr1 (105-141)||(27341878-27341914)
chr1 (69-144)||(31421010-31421085)
[»] chr6 (5 HSPs)
chr6 (27-223)||(21986537-21986714)
chr6 (315-417)||(33348071-33348173)
chr6 (315-415)||(21986345-21986445)
chr6 (179-223)||(16707641-16707685)
chr6 (179-223)||(29214009-29214053)
[»] chr2 (2 HSPs)
chr2 (60-223)||(31965459-31965621)
chr2 (60-142)||(14905456-14905538)
[»] scaffold0284 (1 HSPs)
scaffold0284 (73-223)||(457-608)
[»] chr4 (6 HSPs)
chr4 (21-223)||(314630-314841)
chr4 (21-223)||(6554848-6555055)
chr4 (75-142)||(4235993-4236060)
chr4 (105-155)||(37531692-37531742)
chr4 (105-141)||(13240408-13240444)
chr4 (179-223)||(22678745-22678789)
[»] scaffold0114 (1 HSPs)
scaffold0114 (60-223)||(37346-37510)
[»] scaffold0211 (2 HSPs)
scaffold0211 (132-223)||(18137-18230)
scaffold0211 (60-112)||(16765-16817)
[»] scaffold0380 (1 HSPs)
scaffold0380 (111-223)||(14811-14925)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 27593249 - 27593483
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27593249 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaaaaattgcaacaccaatttaaaatttca 27593348  T
Q  120 aataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27593349 aataagcatgtattttgtcaacttagcaaaacacatatgcatttttccactatgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 27593448  T
Q  218 ttgaatnnnnnnntagcatgagaacgaatgatttc 252  Q
    ||||||       |||||||| |||||||||||||    
T  27593449 ttgaataaaaaaatagcatgaaaacgaatgatttc 27593483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 23570218 - 23570404
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||                   ||||||||||| |    
T  23570218 cgttgctggtaattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagactcaa-------------------atttaaaatttta 23570298  T
Q  120 aataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||| ||||    
T  23570299 aataagcatgtattttgtcaacttagcaaaacacatatgcatttttccattgtgaggttctaccaaagaccaaaattgaaggaatttgaaataagtgagg 23570398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 30326698 - 30326818
Alignment:
Q  106 aatttaaaatttcaaataagcatgtattttgtcaacttagcaaaac---acatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaat 202  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||   | ||||||||||||| |||||||||||||||||||| |||| | |||||||    
T  30326698 aatttaaaattttaaataagcgtgtatattgtcaacttagcaaaacggcatatgcatttttccattgtgaagttctaccaaagacaaaaaatgaaggaat 30326797  T
Q  203 ttgaaataagggaggttgaat 223  Q
    |||||||||| ||||||||||    
T  30326798 ttgaaataagtgaggttgaat 30326818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 9025470 - 9025260
Alignment:
Q  21 gttgcgggtaattttgtgggtttgttgaagaatttggaat--------aattaatataccacaaattagactcaattaaagaattgcaacaccaatttaa 112  Q
    ||||| |||||||||||||| ||||||||||||| ||| |        ||||| | ||| ||||||||||||||||||||||||||||||| | ||||||    
T  9025470 gttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaaagaattgcaacatcgatttaa 9025371  T
Q  113 aatttcaaataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaata 210  Q
    | |||  |||||| |||| ||||||||||| || | |||||  ||||||||||||| ||| |  ||||| |||||| | ||||| |||||||||||||||    
T  9025370 attttttaataagtatgt-ttttgtcaactcagtagaacacatatgcatttttccattgttagattcta-caaagatccaaagtgaaggaatttgaaata 9025273  T
Q  211 agggaggttgaat 223  Q
    |||||||||||||    
T  9025272 agggaggttgaat 9025260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 417
Target Start/End: Original strand, 30326909 - 30327011
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||| ||| || |||||||| ||||||||||| |||||| |||||| || |||||||| |||| |  ||||||||||||||||||||||||| ||||||    
T  30326909 tcatcataactttgggacttccaagggatcctatcttgagttttatcaccacattagaccaagaaaaaatacacaagtgaaattgatatccttccatctc 30327008  T
Q  415 act 417  Q
    |||    
T  30327009 act 30327011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 415
Target Start/End: Original strand, 23570509 - 23570596
Alignment:
Q  328 gggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctca 415  Q
    |||||||| ||||||||||| |||||| |||||| || || ||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  23570509 gggacttccaagggatcctatcttgagttttatcaccacaatagaccaagagaaaatacacaagtgaaattgatatccttccatctca 23570596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30326632 - 30326698
Alignment:
Q  21 gttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaa 87  Q
    ||||| ||||||||| ||||||| ||||||||||| || |||||||||||||| |||||||||||||    
T  30326632 gttgctggtaattttatgggtttcttgaagaatttagagtaattaatataccaaaaattagactcaa 30326698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 36392069 - 36392032
Alignment:
Q  105 caatttaaaatttcaaataagcatgtattttgtcaact 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36392069 caatttaaaatttcaaataagcatgtattttgtcaact 36392032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 7744136 - 7744179
Alignment:
Q  120 aataagcatgtattttgtcaacttagcaaaacacatgcattttt 163  Q
    |||||||||||||||||||||||||  |||||| ||||||||||    
T  7744136 aataagcatgtattttgtcaacttaaaaaaacatatgcattttt 7744179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 19319245 - 19319280
Alignment:
Q  21 gttgcgggtaattttgtgggtttgttgaagaatttg 56  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19319245 gttgctggtaattttgtgggtttgttgaagaatttg 19319280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 39184632 - 39184398
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39184632 cgttgccggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaaaaattgcaacaccaatttaaaatttca 39184533  T
Q  120 aataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39184532 aataagcatgtattttgtcaacttagcaaaacacaaatgcatttttccagtgtgaagttctaccaaagaccaaaagtaaaagaatttgaaataagggagg 39184433  T
Q  218 ttgaatnnnnnnntagcatgagaacgaatgatttc 252  Q
    ||||||       |||||||| |||||||||||||    
T  39184432 ttgaataaaaaaatagcatgaaaacgaatgatttc 39184398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 40058244 - 40058039
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  40058244 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccataaattagactcaattaaaaaattgcaacaccaatttaaaatttca 40058145  T
Q  120 aataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40058144 aataagcatgtattttgtcaacttagcaaaacacatatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaagaatttgaaataagggagg 40058045  T
Q  218 ttgaat 223  Q
    ||||||    
T  40058044 ttgaat 40058039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 14233302 - 14233098
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||| |    
T  14233302 cgttgctggtaattttatgggtttgttgaagaatttggagtaattaatataccacaaattaaactcaaataaaaaattgcaacaccaattt-aaatttta 14233204  T
Q  120 aataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  14233203 aataagcatgtattttgtcaacttagcaaaacacatatgtatttttccatcgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataagcgagg 14233104  T
Q  218 ttgaat 223  Q
    ||||||    
T  14233103 ttgaat 14233098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 40057946 - 40057847
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40057946 tcatcttaattttgggacttctaagggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 40057847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 39184335 - 39184236
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39184335 tcatcttaatttcgagacttctaagggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcatttcatctc 39184236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 2251347 - 2251242
Alignment:
Q  120 aataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||  ||||    
T  2251347 aataagcatgtattttgtcaacttagcaaaacacatatgcatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataattgagg 2251248  T
Q  218 ttgaat 223  Q
    ||||||    
T  2251247 ttgaat 2251242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 20790743 - 20790586
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| ||||||||| ||| ||| |||||||||||||| |||||||||||||| ||||||||||||                   |||||||||||| |    
T  20790743 cgttgctggtaattttatggatttcttgaagaatttggagtaattaatataccaaaaattagactca-------------------aatttaaaatttta 20790663  T
Q  120 aataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagt 194  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||    
T  20790662 aataagcatgtattttgtcaacttagcaaaacacaaatgcatttttccgttgtgaagttctaccaaagaccaaaagt 20790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 417
Target Start/End: Complemental strand, 2251150 - 2251048
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||| ||| || |||||||| ||||||||||| |||||| |||||| || |||||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  2251150 tcatcataactttgggacttccaagggatcctatcttgagttttatcaccacattagaccaagagaaaatacacaagtgaaattgatatccttccatctc 2251051  T
Q  415 act 417  Q
    |||    
T  2251050 act 2251048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 417
Target Start/End: Complemental strand, 20790487 - 20790385
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||| ||| || |||||||| ||||||||||| |||||| ||||||||| |||||||| ||||||   |||||||||||||||||||||||| ||||||    
T  20790487 tcatcataactttgggacttccaagggatcctatcttgagttttatcgccacattagaccaagagaaattacacaagtgaaattgatatccttccatctc 20790388  T
Q  415 act 417  Q
    |||    
T  20790387 act 20790385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 14045551 - 14045462
Alignment:
Q  328 gggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctcact 417  Q
    |||||||| |||| ||||||||||||  ||||||||| ||||||||||| |||  ||||||||||||||||||||||||| |||||||||    
T  14045551 gggacttccaaggaatcctaccttgatttttatcgccacattagactaaaagaaaatacacaagtgaaattgatatccttccatctcact 14045462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 52754060 - 52753927
Alignment:
Q  73 acaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgt 170  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||  |||||| | || ||||||||||| || | |||||  ||||||||||||| |||    
T  52754060 acaaattagactcaattaaagaatcgcaacatcaatttaaatttttcaataagtaggt-ttttgtcaactcagtagaacacatatgcatttttccattgt 52753962  T
Q  171 gaagttctaccaaagaccaaaagtaaaggaatttg 205  Q
     |  |||||| ||||||||||||| ||||||||||    
T  52753961 tagattctacaaaagaccaaaagtgaaggaatttg 52753927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 2251460 - 2251393
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaa 87  Q
    |||||| | ||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  2251460 cgttgctgataattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagactcaa 2251393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 50241958 - 50241830
Alignment:
Q  21 gttgcgggtaattttgtgggtttgttgaagaatt--------tggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaa 112  Q
    ||||| |||||||||||||| |||||||||||||        |||| |||||| | ||| |||||||||||||||||||||||| |||||| ||||||||    
T  50241958 gttgctggtaattttgtgggattgttgaagaattaggagttttggagtaattattttacgacaaattagactcaattaaagaatcgcaacatcaatttaa 50241859  T
Q  113 aatttcaaataagcatgtattttgtcaact 142  Q
    |  ||  |||||| |||| |||||||||||    
T  50241858 atattttaataagtatgt-ttttgtcaact 50241830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 50241820 - 50241787
Alignment:
Q  190 aaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||| ||||||||||||||||||||||||||||    
T  50241820 aaagtgaaggaatttgaaataagggaggttgaat 50241787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 52121 - 52077
Alignment:
Q  179 accaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    |||||||||||||| | ||||||||| |||||| |||||||||||    
T  52121 accaaagaccaaaattgaaggaatttaaaataatggaggttgaat 52077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 11655163 - 11655207
Alignment:
Q  179 accaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||||||||||||  |||||||||||||||||  ||||||||||    
T  11655163 accaaagaccaaaaacaaaggaatttgaaataatagaggttgaat 11655207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 45245785 - 45245551
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  45245785 cgttgcaggtaattttgtgagtttgttgaagaatttggaataattaatataccacaaattagactcaattaaaaaattgcaacaccaatttaaaatttta 45245686  T
Q  120 aataagcatgtattttgtcaacttagcaaaacaca--tgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  45245685 aataagcatgtattttgtcaacttaacaaaacacatgtgcatttttccactgtaaagttctaccaaagaccaaaagtaaaggaatttaaaataagggagg 45245586  T
Q  218 ttgaatnnnnnnntagcatgagaacgaatgatttc 252  Q
    ||||||       |||||||| |||||||||||||    
T  45245585 ttgaataaaataatagcatgaaaacgaatgatttc 45245551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 23684551 - 23684346
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |    
T  23684551 cgttgctggtaattttatgggttttttgaagaatttggagtaattaatataccaaaaattagactcaaataaaaaattgcaacaccaatttaaaatttta 23684452  T
Q  120 aataagcatgtattttgtcaacttagcaaaac--acatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  23684451 aataagcatgtattttgtcaacttagcaaaacatatatgcatttttccattgtgaagttctaccaaagatcaaaagtgaaggaatttgaaataagtgagg 23684352  T
Q  218 ttgaat 223  Q
    ||||||    
T  23684351 ttgaat 23684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 361501 - 361315
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||| ||                   |||||||||||| |    
T  361501 cgttgctggtaattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagacgca-------------------aatttaaaatttta 361421  T
Q  120 aataagcatgtattttgtcaacttagcaaaacac--atgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggagg 217  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  361420 aataagcatgtattttgtcaacttagcaaaacacatatgcattttttcattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataagtgagg 361321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 45245488 - 45245389
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245488 tcatctaaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 45245389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 41526661 - 41526810
Alignment:
Q  75 aaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtga 172  Q
    |||||||||||||||||||||| |||||| ||||||||| |||  |||||| || | ||||||||||| || | |||||||  ||||||||||| ||| |    
T  41526661 aaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatat-ttttgtcaactcagtagaacacatatgcatttttccattgtta 41526759  T
Q  173 agttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
      |||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  41526760 gattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 41526810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 40887028 - 40886933
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||||||||||| |||||||    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40887028 tcatcttaatttcaggacttc----ggatcctaccttgagttttatcaccacattagactaagagacgatacacaagtgaaaatgatatcctttcatctc 40886933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 361222 - 361124
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatct 413  Q
    ||||| ||| || |||||||  ||||||||||| |||||| |||||| || |||||||| ||||||  ||||| ||||||||||||||||||| |||||    
T  361222 tcatcataactttgggactttcaagggatcctatcttgagttttatcaccacattagaccaagagaaaatacaaaagtgaaattgatatccttccatct 361124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 10280034 - 10279928
Alignment:
Q  108 tttaaaatttc-aaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaattt 204  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||   |||||||| | ||| || ||| |||||||| ||||||| || ||||||    
T  10280034 tttaaaatttctaaataagcatgtattttatcaacttagcgaaacacatcaacatttttctattgtcaaattccaccaaagatcaaaagtgaaagaattt 10279935  T
Q  205 gaaataa 211  Q
     ||||||    
T  10279934 aaaataa 10279928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 14714940 - 14714890
Alignment:
Q  105 caatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat 155  Q
    ||||||||||| || |||||||||||||||| |||||| | ||||||||||    
T  14714940 caatttaaaatgtctaataagcatgtattttatcaactcaccaaaacacat 14714890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 34802935 - 34802887
Alignment:
Q  107 atttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat 155  Q
    |||| ||||||  ||||| |||||||||||||||||||||| |||||||    
T  34802935 attttaaatttataataaacatgtattttgtcaacttagcataacacat 34802887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 15530638 - 15530440
Alignment:
Q  27 ggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagc 126  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  15530638 ggtaattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagactcaaataaaaaattgcaacaccaatttaaaattttaaataagc 15530539  T
Q  127 atgtattttgtcaacttagcaaaac--acatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    |||||||||||||||||||| ||||  | |||||||||| || ||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||    
T  15530538 atgtattttgtcaacttagcgaaacatatatgcattttttcattgtgaagttctaccaaagatcaaaagtgaaggaagttgaaataagcgaggttgaat 15530440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 22539801 - 22539604
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttca 119  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||| || |||| |||||||||||||||||||||||| |    
T  22539801 cgttgctggtaattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagacttaaataaaaaattgcaacaccaatttaaaatttta 22539702  T
Q  120 aataagcatgtattttgtcaacttagcaaaacacatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggtt 219  Q
    |||||||||||||||||||||      || | | ||||||||||||| |||||||||||| |||||| ||||| | ||||||||| ||||||| ||||||    
T  22539701 aataagcatgtattttgtcaa------aacatatatgcatttttccattgtgaagttctaacaaagatcaaaaatgaaggaatttcaaataagtgaggtt 22539608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 21467389 - 21467508
Alignment:
Q  106 aatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatt 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  21467389 aatttaaaattttaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatt 21467488  T
Q  204 tgaaataagggaggttgaat 223  Q
    ||||||||| ||||||||||    
T  21467489 tgaaataagtgaggttgaat 21467508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 19102420 - 19102539
Alignment:
Q  106 aatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatt 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||||||||||||||||||| ||||||||    
T  19102420 aatttaaaattttaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttacattgtgaagttctaccaaagaccaaaagtgaaggaatt 19102519  T
Q  204 tgaaataagggaggttgaat 223  Q
    ||||| ||| ||||||||||    
T  19102520 tgaaacaagtgaggttgaat 19102539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 315 - 417
Target Start/End: Original strand, 19102631 - 19102733
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||| ||| || |||||||| ||||||||||| ||||||||||||| || |||||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  19102631 tcatcataactttgggacttccaagggatcctatcttgagctttatcaccacattagaccaagagaaaatacacaagtgaaattgatatccttccatctc 19102730  T
Q  415 act 417  Q
    |||    
T  19102731 act 19102733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 49882273 - 49882109
Alignment:
Q  60 taattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacac--atgc 157  Q
    |||||| | ||| |||||||||||||||||||||||| |||||| ||||||||| |||  |||||| |||| ||||||||||| || | |||||  ||||    
T  49882273 taattattttacgacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaactcagtagaacacatatgc 49882175  T
Q  158 atttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||||||  ||| |  |||||| ||||| | ||||| ||||||||||||||||| ||||||||||    
T  49882174 atttttcctttgttagattctacaaaagatccaaagtgaaggaatttgaaataagagaggttgaat 49882109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 19102353 - 19102420
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaa 87  Q
    |||||| ||||||||| ||||||| ||||||||| |||| |||||||||||||| |||||||||||||    
T  19102353 cgttgctggtaattttatgggtttcttgaagaatctggagtaattaatataccaaaaattagactcaa 19102420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 21467322 - 21467389
Alignment:
Q  20 cgttgcgggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaa 87  Q
    |||||| | ||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  21467322 cgttgctgataattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagactcaa 21467389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 21467631 - 21467692
Alignment:
Q  356 tttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctcact 417  Q
    |||||| || |||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  21467631 tttatcaccacattagaccaagagaaaatacacaagtgaaattgatatcctttcatctcact 21467692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 28962006 - 28961956
Alignment:
Q  105 caatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat 155  Q
    ||||||||||| || |||||||||||||||| |||||| | ||||||||||    
T  28962006 caatttaaaatgtctaataagcatgtattttatcaactcaccaaaacacat 28961956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 27341914 - 27341878
Alignment:
Q  105 caatttaaaatttcaaataagcatgtattttgtcaac 141  Q
    ||||||||||| || ||||||||||||||||||||||    
T  27341914 caatttaaaatatctaataagcatgtattttgtcaac 27341878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 31421085 - 31421010
Alignment:
Q  69 taccacaa-attagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaactta 144  Q
    |||||||| |||||||||||| ||| |||||   || ||||||||||| || ||||| |||||||||||||||||||    
T  31421085 taccacaatattagactcaataaaa-aattgtcccatcaatttaaaatgtctaataaacatgtattttgtcaactta 31421010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 21986714 - 21986537
Alignment:
Q  27 ggtaattttgtgggtttgttgaagaatttggaataattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagc 126  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||                   ||||||||||| |||||||     
T  21986714 ggtaattttatgggtttcttgaagaatttggagtaattaatataccaaaaattagactcaa-------------------atttaaaattttaaataagt 21986634  T
Q  127 atgtattttgtcaacttagcaaaacacatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||    
T  21986633 atgtattttgtcaacttagtaaaacacatgtatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataagttaggttgaat 21986537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 417
Target Start/End: Original strand, 33348071 - 33348173
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||| ||| || |||||||| ||||||||||| |||||| |||||| || |||||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  33348071 tcatcataactttgggacttccaagggatcctatcttgagttttatcaccacattagaccaagagaaaatacacaagtgaaattgatatccttccatctc 33348170  T
Q  415 act 417  Q
    |||    
T  33348171 act 33348173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 21986445 - 21986345
Alignment:
Q  315 tcatcttaatttcgggacttctaagggatcctaccttgagctttatcgccgcattagactaagagacgatacacaagtgaaattgatatcctttcatctc 414  Q
    ||||| ||| || |||||||  ||||||||||| |||||| |||||| || |||||||| ||||||  |||||||||||||||| |||||||| ||||||    
T  21986445 tcatcataactttgggactttcaagggatcctatcttgagttttatcaccacattagaccaagagaaaatacacaagtgaaatttatatccttccatctc 21986346  T
Q  415 a 415  Q
    |    
T  21986345 a 21986345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 16707685 - 16707641
Alignment:
Q  179 accaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    |||||||||||||||| || |||||||||||||  ||||||||||    
T  16707685 accaaagaccaaaagtgaaagaatttgaaataatagaggttgaat 16707641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29214009 - 29214053
Alignment:
Q  179 accaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||||    
T  29214009 accaaagaccaaaagtgaagaaatttgaaataattgaggttgaat 29214053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 31965459 - 31965621
Alignment:
Q  60 taattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacatgcat 159  Q
    |||||| | ||| |||||||||| ||||||||||||| |||||| ||||||||| |||  |||||| |||| ||||||||||| || | |||| ||||||    
T  31965459 taattattttacgacaaattagattcaattaaagaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaactcagtagaacatatgcat 31965557  T
Q  160 ttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||||||||| |  |||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  31965558 ttttccactgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 31965621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 14905538 - 14905456
Alignment:
Q  60 taattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaact 142  Q
    |||||| | ||||| |||||||| |||||||||  | ||| | | || ||||||||||||||||||||| |||||||||||||    
T  14905538 taattattttaccaaaaattagaatcaattaaaataatgctatatcattttaaaatttcaaataagcatatattttgtcaact 14905456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 457 - 608
Alignment:
Q  73 acaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgt 170  Q
    ||||||||||||||||||||||||  ||||| ||||||||| |||  |||||| |||| ||||||||||| || | |||||||  |||||||| || |||    
T  457 acaaattagactcaattaaagaatcacaacatcaatttaaattttttaataagtatgt-ttttgtcaactcagtagaacacatatgcattttttcattgt 555  T
Q  171 gaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
     |  |||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  556 tagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 314841 - 314630
Alignment:
Q  21 gttgcgggtaattttgtgggtttgttgaagaatttggaat--------aattaatataccacaaattagactcaattaaagaattgcaacaccaatttaa 112  Q
    ||||| |||||||||||||| ||||||||||||| ||| |        ||||| | ||| | ||||||||||||||||||||||||||||| ||||||||    
T  314841 gttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgataaattagactcaattaaagaattgcaacatcaatttaa 314742  T
Q  113 aatttcaaataagcatgtattttgtcaactta--gcaaaacacatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaata 210  Q
    | |||  |||||| |||| ||||||||| | |  | || ||| ||||||||||||| ||| |  |||||| ||||||| ||||| ||||| |||||||||    
T  314741 attttttaataagtatgt-ttttgtcaattcagtggaacacatatgcatttttccattgttagattctacaaaagacctaaagtgaaggattttgaaata 314643  T
Q  211 agggaggttgaat 223  Q
    |||||||||||||    
T  314642 agggaggttgaat 314630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 6555055 - 6554848
Alignment:
Q  21 gttgcgggtaattttgtgggtttgttgaagaatttggaat--------aattaatataccacaaattagactcaattaaagaattgcaacaccaatttaa 112  Q
    ||||| |||||||||||||| ||||||||||||| ||| |        ||||| | ||| |||||||||||||||||||||||| |||||| ||||||||    
T  6555055 gttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaaagaatcgcaacatcaatttaa 6554956  T
Q  113 aatttcaaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaata 210  Q
    | |||  |     ||   | |||||||||| |  | |||||||  ||||||||||| ||| |  |||||||||||||| ||||| |||||||||||||||    
T  6554955 atttttta-----caacaaatttgtcaactcattagaacacatatgcatttttccattgttagattctaccaaagacccaaagtgaaggaatttgaaata 6554861  T
Q  211 agggaggttgaat 223  Q
    ||||| |||||||    
T  6554860 agggatgttgaat 6554848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 4235993 - 4236060
Alignment:
Q  75 aaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaact 142  Q
    |||||||||||||||||| || ||  ||| || |||||||||||||| |||||| |||||| ||||||    
T  4235993 aaattagactcaattaaaaaaatgtcacatcattttaaaatttcaaacaagcatatattttttcaact 4236060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 37531692 - 37531742
Alignment:
Q  105 caatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat 155  Q
    ||||||||||| || |||||||||||||||| |||||| | ||||||||||    
T  37531692 caatttaaaatgtctaataagcatgtattttatcaactcaccaaaacacat 37531742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 13240408 - 13240444
Alignment:
Q  105 caatttaaaatttcaaataagcatgtattttgtcaac 141  Q
    ||||||||||| || ||||||||||||||||||||||    
T  13240408 caatttaaaatatctaataagcatgtattttgtcaac 13240444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 22678745 - 22678789
Alignment:
Q  179 accaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    |||||||||||||| ||||||||||| ||||||  ||||||||||    
T  22678745 accaaagaccaaaattaaaggaatttaaaataatagaggttgaat 22678789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 37510 - 37346
Alignment:
Q  60 taattaatataccacaaattagactcaattaaagaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacat--gc 157  Q
    |||||| | ||| |||||| ||||||||||||||||  |||||| ||||||||| |||| |||||| |||| ||||||||||| || | |||||||  ||    
T  37510 taattattttacgacaaatcagactcaattaaagaaccgcaacatcaatttaaattttctaataagtatgt-ttttgtcaactcagtagaacacatatgc 37412  T
Q  158 atttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||||||| ||| |  || ||| ||||||| ||||| ||||||||||||||||||||| ||||||    
T  37411 atttttccattgttagattatacaaaagacccaaagtgaaggaatttgaaataagggagattgaat 37346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 18137 - 18230
Alignment:
Q  132 ttttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaataagggaggttgaat 223  Q
    ||||||||||| || | |||||||  ||||||||||| ||| |  |||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  18137 ttttgtcaactgagtagaacacatatgcatttttccattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 18230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 16765 - 16817
Alignment:
Q  60 taattaatataccacaaattagactcaattaaagaattgcaacaccaatttaa 112  Q
    |||||| | ||| ||||||||||||||||| |||||| |||||| ||||||||    
T  16765 taattattttacgacaaattagactcaattcaagaatcgcaacatcaatttaa 16817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 14925 - 14811
Alignment:
Q  111 aaaatttcaaataagcatgtattttgtcaacttagcaaaacacat--gcatttttccactgtgaagttctaccaaagaccaaaagtaaaggaatttgaaa 208  Q
    ||||| || ||||| ||| |||||||||||| || |||||||| |  |||||||| || ||| || |   |||||||||||||||| ||||||||| |||    
T  14925 aaaatgtctaataaacatatattttgtcaacgtaacaaaacacgtctgcattttttcattgtcaaatcagaccaaagaccaaaagtgaaggaatttaaaa 14826  T
Q  209 taagggaggttgaat 223  Q
    |||  ||||||||||    
T  14825 taatagaggttgaat 14811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University