View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_1 (Length: 690)
Name: NF3520_low_1
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 4112563 - 4112878
Alignment:
| Q |
18 |
atgagaaacttctgaatgttcacagtgtaatgcctctttctctctgtttttgaattgaatattgctcttttcatgcaataaaaatttctgtttcctatat |
117 |
Q |
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| T |
4112563 |
atgagaaacttctgaatgttcacagtgtaatgcctctttctctctgtttttgaattgaatattgctcttttcatgcaataaaaatttctgtttcctatat |
4112662 |
T |
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| Q |
118 |
atacatattgagatcaaatggctaatcaatctaagaattatgtttcatgaatataataataggtggctgatcgtaacaatgatcctcaattggcagactt |
217 |
Q |
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| T |
4112663 |
atacatattgagatcaaatggctaatcaatctaagaattatgtttcatgaatataataataggtggctgatcgtaacaatgatcctcaattggcagactt |
4112762 |
T |
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| Q |
218 |
catcgagagcgagtttttggtagagcaggtaacacttaccttaagttgtcaagttgaaacttgaaatcatttttctgtatacttggagtagaagaaatac |
317 |
Q |
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| T |
4112763 |
catcgagagcgagtttttggtagagcaggtaacacttaccttaagttgtcaagttgaaacttgaaatcatttttctgtatacttggagcagaagaaatac |
4112862 |
T |
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| Q |
318 |
tttgtttgtatccatg |
333 |
Q |
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| T |
4112863 |
tttgtttgtatccatg |
4112878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 357 - 685
Target Start/End: Original strand, 4113104 - 4113422
Alignment:
| Q |
357 |
aattgtagatgttttcagattatacttggatgatttttgacatgaaaaatctttagatccaaaagttactaagtgtatcaatattttccaattttttctt |
456 |
Q |
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| T |
4113104 |
aattgtagatgttttcagattatacttggatga-------catgaaaaatctttagatccaaaagttactaagtgtatcaaaattttccaattttttct- |
4113195 |
T |
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| Q |
457 |
cttgttcttatatgtattttccttgcacaggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgt |
556 |
Q |
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| T |
4113196 |
--tgttcttatatgtattttccttgcacaggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgt |
4113293 |
T |
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| Q |
557 |
atatttcctccactaacattggtaatatgaaaatcaaatgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcaga |
656 |
Q |
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| T |
4113294 |
atatttcctccactaccattggtaatatgaaaatcaaatgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcaga |
4113393 |
T |
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| Q |
657 |
ctcttctccattgattaagatgatgatgt |
685 |
Q |
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| T |
4113394 |
ctcttctccattgattaagatgatgatgt |
4113422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 484 - 560
Target Start/End: Complemental strand, 25792566 - 25792490
Alignment:
| Q |
484 |
caggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatat |
560 |
Q |
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| T |
25792566 |
caggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttggaaagggtcatggtatgtatat |
25792490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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