View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3520_low_11 (Length: 393)
Name: NF3520_low_11
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 49904358 - 49904727
Alignment:
| Q |
1 |
ccttcttttgaattggtaagaagtttctgtccttctgatcataaagctattacttcagtaatcatttgcccctcttcaatttgtgattctcgctttaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49904358 |
ccttcttttgaattggtaagaagtttctgtccttctgatcataaagctattacttcagtaatcatttgcccctcttcaatttgtgattctcgctttaaac |
49904457 |
T |
|
| Q |
101 |
caaatcttcaatttttgcttgattttggtgtcactcgttcaagtatttaccgtttgcttactagcagaccttccacaatatgctgtactgatttgaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49904458 |
caaatcttcaatttttgcttgattttggtgtcactcgttcaagtatttaccgtttgcttactagcagaccttccacaatatgttgtactgatttgaaaaa |
49904557 |
T |
|
| Q |
201 |
ggctttagaggagattaaggaattagggtttcaaccttccaaatacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggat |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49904558 |
ggctttggaggagattaaggaattagggtttcaaccttccaaatacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggat |
49904657 |
T |
|
| Q |
301 |
gccaaagttgatgtcttgaagagttggggttgttctgaactctgaagatgcagtttttaatgcatttaggaagcaac |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49904658 |
gccaaagttgatgtcttgaagagttggggttgt-------tctgaagatgcagtttttaatgcatttaggaagcaac |
49904727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 49558905 - 49558571
Alignment:
| Q |
5 |
cttttgaattggtaagaagtttctgtccttctgatcataaagctattacttcagtaatcatttgcccctcttcaatttgtgattctcgctttaaaccaaa |
104 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| | ||||||||| ||| ||||| ||| || |||| ||| | ||| ||||| | |||||||| |
|
|
| T |
49558905 |
cttttgaattggtaaggagtttctgcccctctgataaaaaagctattcattctataatcgcttgtcctacttccattagcgatcctcgcatgaaaccaaa |
49558806 |
T |
|
| Q |
105 |
tcttcaatttttgcttgattttggtgtcactcgttcaagtatttaccgtttgcttactagcagaccttccacaatatgctgtactgatttgaaaaaggct |
204 |
Q |
| |
|
| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||| |
|
|
| T |
49558805 |
tgtgaaatttttgcttgattttggtctcactgcttcaagtatttaccgtttgcttactagcagaccttctataatatgtactagtgatttgaaaaaggct |
49558706 |
T |
|
| Q |
205 |
ttagaggagattaaggaattagggtttcaaccttccaaatacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgcca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
49558705 |
ttggaggagattaaggaattagggtttcaaccttccaaatacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgcta |
49558606 |
T |
|
| Q |
305 |
aagttgatgtcttgaagagttggggttgttctgaa |
339 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
49558605 |
aatttgatgtcttgaagagttggggttgttctgaa |
49558571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 49563068 - 49562734
Alignment:
| Q |
5 |
cttttgaattggtaagaagtttctgtccttctgatcataaagctattacttcagtaat--catttgcccctcttcaatttgtgattctcgctttaaacca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | ||||||||| || ||||| ||||| || || ||||| ||||| |||| | ||||| |
|
|
| T |
49563068 |
cttttgaattggtaagaagtttctgtccctctgataagaaagctattgattgtgtaattgcattt--cctgctacaattagtgatggtcgcatgaaaccc |
49562971 |
T |
|
| Q |
103 |
aatcttcaatttttgcttgattttggtgtcactcgttcaagtatttaccgtttgcttactagcagaccttccacaatatgctgtactgatttgaaaaagg |
202 |
Q |
| |
|
||| | |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | | ||| ||||| | || |
|
|
| T |
49562970 |
aatttgaaattcttgcttgatactggtgtcactcgttcaagtatttaccgtttacttactagcagaccttctgtaattttttcatctgttttgaggacgg |
49562871 |
T |
|
| Q |
203 |
ctttagaggagattaaggaattagggtttcaaccttccaaatacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgc |
302 |
Q |
| |
|
|| | |||||||||||||||||||||||||| ||||| | |||||||||||||| ||||| |||||||||| ||| |||| ||||||||||||||| | |
|
|
| T |
49562870 |
ctgtggaggagattaaggaattagggtttcatccttctagttacaatttttgtgtcgcattgttggccaaaaaggccatcactaaatcccaatgggattc |
49562771 |
T |
|
| Q |
303 |
caaagttgatgtcttgaagagttggggttgttctgaa |
339 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| ||||||| |
|
|
| T |
49562770 |
caaagtcgatgccttgaagagctggggttattctgaa |
49562734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 9421406 - 9421325
Alignment:
| Q |
244 |
tacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgccaaagttgatgtcttgaagagtt |
325 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9421406 |
tacaatttttgtgtggcattacccgacaaaagggctatcaccaaatcccaatgggatgccaaagttgatgccttgaagagtt |
9421325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 9441451 - 9441370
Alignment:
| Q |
244 |
tacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgccaaagttgatgtcttgaagagtt |
325 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| || |||||||||||||||| ||||||||||||| || |||||||| |
|
|
| T |
9441451 |
tacaatttttgtgtggcattaccggccaaaagggctatctccaaatcccaatgggacgccaaagttgatgcctcgaagagtt |
9441370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 41488320 - 41488265
Alignment:
| Q |
249 |
tttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgcca |
304 |
Q |
| |
|
||||||||| | | || ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41488320 |
tttttgtgtggtactagtggtcaaaagggctgtcaccaaatctcaatgggatgcca |
41488265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University