View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_12 (Length: 392)
Name: NF3520_low_12
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 43586780 - 43587143
Alignment:
| Q |
16 |
caaatcacacagcagaagctaggaagcaacattacacttctaaagcccggaagnnnnnnnn--gacacgtcacgtgataaagtaaagccagccaccaagg |
113 |
Q |
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| T |
43586780 |
caaatcacacagcagaaactaggaagcgacaccacacttctaaagcccggaagaaaaaaaaaagacacgtcacgtgataaagtaaagccaaccaccaagg |
43586879 |
T |
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| Q |
114 |
acctcaacaaccgagatataacaaccagcagaactcaatacagattagccctgcttctactccaaaatttagaagattatctaaccaaacatccaaaagg |
213 |
Q |
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| T |
43586880 |
acctcaacaaccgagatataacaaccagcagaactcaatacagattagccctgcttctactccaaaatttagaagattatctaaccaaacatccaaaagg |
43586979 |
T |
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| Q |
214 |
atcccaggacgattcatagaaaggacaaggcaaggataacaagccaccctccctatgtacaatcgccaagacagaacactttgactctatcaactacctc |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43586980 |
atcccaggacgattcattgaaaggacaaggcaaggataacaagccaccctccctatgtacaatcgccaagacagaacactttgactctatcaactacctc |
43587079 |
T |
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| Q |
314 |
agccgccttctcaacgttattattaaataggtgctcggtctagacttccaaatcgaccaaagca |
377 |
Q |
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| T |
43587080 |
agccgcgttctcaacgttattaataaataggtgctcggtctagacttccaaatcgaccaaagca |
43587143 |
T |
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