View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3520_low_13 (Length: 376)

Name: NF3520_low_13
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3520_low_13
NF3520_low_13
[»] chr3 (9 HSPs)
chr3 (13-359)||(28521572-28521920)
chr3 (72-359)||(28050488-28050775)
chr3 (64-250)||(27913470-27913654)
chr3 (76-318)||(28001344-28001571)
chr3 (284-356)||(28146757-28146831)
chr3 (100-184)||(27461854-27461937)
chr3 (291-348)||(45483744-45483801)
chr3 (306-355)||(33087858-33087907)
chr3 (291-359)||(46091784-46091853)
[»] scaffold0257 (2 HSPs)
scaffold0257 (64-171)||(11038-11145)
scaffold0257 (160-359)||(16301-16501)
[»] chr4 (5 HSPs)
chr4 (281-359)||(20447733-20447811)
chr4 (281-359)||(47668873-47668951)
chr4 (285-359)||(55250559-55250633)
chr4 (291-359)||(1101062-1101130)
chr4 (295-359)||(46964070-46964134)
[»] chr2 (9 HSPs)
chr2 (281-359)||(33226597-33226675)
chr2 (291-359)||(21017197-21017265)
chr2 (291-359)||(18061103-18061171)
chr2 (291-348)||(19865995-19866052)
chr2 (291-348)||(19870896-19870953)
chr2 (291-348)||(19875797-19875854)
chr2 (283-359)||(43559741-43559817)
chr2 (200-250)||(17508848-17508898)
chr2 (293-359)||(45040055-45040121)
[»] chr8 (4 HSPs)
chr8 (291-359)||(33828321-33828389)
chr8 (290-359)||(10207929-10207998)
chr8 (290-359)||(42664127-42664196)
chr8 (281-359)||(41877533-41877611)
[»] chr1 (3 HSPs)
chr1 (281-359)||(44508186-44508264)
chr1 (291-357)||(31067062-31067128)
chr1 (285-359)||(41335988-41336062)
[»] chr6 (1 HSPs)
chr6 (290-347)||(20902845-20902902)
[»] chr5 (2 HSPs)
chr5 (290-359)||(29790682-29790751)
chr5 (291-359)||(14144862-14144930)
[»] scaffold0005 (1 HSPs)
scaffold0005 (291-359)||(270352-270420)
[»] chr7 (1 HSPs)
chr7 (285-350)||(27705294-27705359)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 28521920 - 28521572
Alignment:
Q  13 aaaatcatttttcgtcaactcctggttctttttaacagactttctgttcctccattaccacctacttatcttgaaaaattacttctttgaactccagtat 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521920 aaaatcatttttcgtcaactcctggttctttttaacaaactttctgttcctccattaccacctacttatcttgaaaaattacttctttgaactccagtat 28521821  T
Q  113 gacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacgaatgatttctaggtttgaaagctaaatattatatttc 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28521820 gacccaaaatttttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacgaatgatttctaggtgtgaaagctaaatattatatttc 28521721  T
Q  213 agtactgaatattgtacaatcactaatgtgtttat--atattaaattttaaacttattatactttgatccaacgacaaggaagaaaataaaaactaacaa 310  Q
    |||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28521720 agtattgaatattgtacaaccactaatgtgtttatatatattaaattttaaacttattatactttgatccaacgagaaggaagaaaataaaaactaacaa 28521621  T
Q  311 tagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28521620 tagttatctacaaaaattgagctctatgaaattttaagaagtcaaattt 28521572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 72 - 359
Target Start/End: Original strand, 28050488 - 28050775
Alignment:
Q  72 acctacttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctata 171  Q
    |||||||| |||||| ||||||||||||| |||| || |||||||| |||| |||||||| |||| |||||||| ||  || ||||||||||||||||||    
T  28050488 acctacttctcttgacaaattacttctttaaacttcaatatgaccctaaaaatttggacgcaagatggtgtgaggaa--gaatgaaagaagtcttctata 28050585  T
Q  172 tacga---atgatttctaggtttgaaagctaaatattatatttcagtact-gaatattgtacaatcactaatgtgtttatatattaaattttaaacttat 267  Q
    ||  |   ||||||| ||||| ||||| |||| |||||||||| || | | ||||| |  |||||| |||||||||||||||| |||||||||||||||     
T  28050586 tattattaatgatttttaggtatgaaaactaagtattatattttaggaattgaataat--acaatcgctaatgtgtttatatagtaaattttaaacttac 28050683  T
Q  268 tatactttgatccaacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    ||||| || ||  ||||| |||||||||||||||| ||| ||||||||||||| |||| ||||| ||||||||| |||||||| | ||||||    
T  28050684 tatacattaataaaacgataaggaagaaaataaaagctaccaatagttatctataaaagttgagttctatgaagatttaagaaattaaattt 28050775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 27913470 - 27913654
Alignment:
Q  64 ccattaccacctacttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagt 163  Q
    |||||| ||||||||| |||||| ||||||||||||||||||  | ||| ||||||||| ||||||||   ||||||||||  |||||||||||| ||||    
T  27913470 ccattaacacctacttctcttgacaaattacttctttgaactttaatatcacccaaaaaatttggacg---gaaggtgtgaagaatagagtgaaaaaagt 27913566  T
Q  164 cttctatatacgaatgatttctaggtttgaaagctaaatattatatttca-gtactgaatattgtacaatcactaatgtgtttatata 250  Q
    |||| ||||| |||| |||||||||| |||||  | ||||||||| |||| ||| |||||| ||||||| ||||||||||||||||||    
T  27913567 cttcgatatatgaattatttctaggtgtgaaaattgaatattatacttcaggtaatgaataatgtacaaccactaatgtgtttatata 27913654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 318
Target Start/End: Original strand, 28001344 - 28001571
Alignment:
Q  76 acttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacg 175  Q
    |||| |||||| ||||||||| ||||||||||| ||||||||||||| ||   || |||||||||||| | |||||| |||||||||||| ||||||| |    
T  28001344 acttctcttgacaaattacttatttgaactccaatatgacccaaaaaattcaaacagaagaaggtgtggggaatagattgaaagaagtctactatatatg 28001443  T
Q  176 aatgatttctaggtttgaaagctaaatattatatttca-gtactgaatattgtacaatcactaatgtgtttatatattaaattttaaacttattatactt 274  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||||| | |||                ||| | |||||||||||||||||||||||    
T  28001444 aatgatttctaggtgtgaaaactaaatatcatatttcaggtactgaataatttac----------------atagagtaaattttaaacttattatactt 28001527  T
Q  275 tgatccaacgacaaggaagaaaataaaaactaacaatagttatc 318  Q
    | ||  || ||||||||||||||||||| |||||||| ||||||    
T  28001528 tcatgaaatgacaaggaagaaaataaaagctaacaatggttatc 28001571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 28146757 - 28146831
Alignment:
Q  284 gacaaggaagaaaataaaaactaacaatagttatctacaaaaattgag--ctctatgaagttttaagaagtcaaa 356  Q
    ||||||||||||||||||| ||||||||||||||||| |||| |||||  || ||||||||||| ||||||||||    
T  28146757 gacaaggaagaaaataaaagctaacaatagttatctataaaatttgagttctatatgaagttttcagaagtcaaa 28146831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 27461937 - 27461854
Alignment:
Q  100 tgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacgaatgatttc 184  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||| | ||| ||||||||| |||||| | |||| ||||||||||    
T  27461937 tgaactccaatatcaccctaaaattt-ggacggaagaaggtgtgtggaatggagtgaaagtagtcttttttatatgaatgatttc 27461854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 45483744 - 45483801
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    |||||||||||| ||||||||| |||| || |||| ||| ||||||||||||||||||    
T  45483744 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaag 45483801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 33087858 - 33087907
Alignment:
Q  306 aacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaa 355  Q
    ||||||| |||| || |||| ||||||| |||||||||||||||||||||    
T  33087858 aacaataattatttataaaagttgagctttatgaagttttaagaagtcaa 33087907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 46091784 - 46091853
Alignment:
Q  291 aagaaaataaaaa-ctaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    ||||||||||||| |||||||||||||| || |||  |||||||||| | ||| || |||||||||||||    
T  46091784 aagaaaataaaaagctaacaatagttatttataaatgttgagctctaaggagtatttagaagtcaaattt 46091853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 11038 - 11145
Alignment:
Q  64 ccattaccacctacttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagt 163  Q
    |||||| ||| || || ||||||  |||||||||||||||||||| ||||| | ||||||||||||| |||||| ||||  |||||||||||||||||||    
T  11038 ccattaacacatatttctcttgacgaattacttctttgaactccaatatgatcgaaaaattttggacagaagaaagtgtaggcaatagagtgaaagaagt 11137  T
Q  164 cttctata 171  Q
    ||||||||    
T  11138 cttctata 11145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 359
Target Start/End: Original strand, 16301 - 16501
Alignment:
Q  160 aagtcttctatatacgaatgatttctaggtttgaaagctaaatattatatttcagtactgaatattgtacaatcactaatgtgt---ttatatattaaat 256  Q
    |||| |||||| || ||||||||||||||| ||||| ||| ||||||||||   ||||| |||| |||||   |||||||||||   ||||||| |||||    
T  16301 aagtattctatgtatgaatgatttctaggtgtgaaaactacatattatattag-gtactcaataatgtaccgccactaatgtgtaatttatatagtaaat 16399  T
Q  257 tttaaacttattatactttgatccaacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaa 356  Q
    ||| |||||  ||  |||| |   |||| ||||||||||||||||| |||| |||||||||||| |||| ||||| | |||||| ||||||||||||| |    
T  16400 tttgaacttgctaatctttaacgaaacggcaaggaagaaaataaaagctaataatagttatctataaaagttgagatgtatgaa-ttttaagaagtcaga 16498  T
Q  357 ttt 359  Q
    |||    
T  16499 ttt 16501  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 20447733 - 20447811
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||| ||||||| ||||| ||||||||| |||| || |||| ||||||||||||| ||| |||||||||||||||    
T  20447733 aacgacaacgaagaaactaaaatctaacaataattatttataaaagttgagctctatgatgttgtaagaagtcaaattt 20447811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 47668873 - 47668951
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||| ||||||| ||||| ||||| ||  |||| || |||| |||| |||||| |||||||||||| ||||||||    
T  47668873 aacgacaatgaagaaactaaaatctaacgatgattatttataaaagttgaactctataaagttttaagaaatcaaattt 47668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 55250633 - 55250559
Alignment:
Q  285 acaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||| ||||||| ||||| ||||||||| |||| ||  ||| ||||||| ||| || ||||||||||||||||||    
T  55250633 acaacgaagaaactaaaatctaacaataattatttattaaagttgagctatataaaattttaagaagtcaaattt 55250559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 1101062 - 1101130
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||||| ||| |||||||||| |  ||||  ||||||||||  |||||||||||| |||||||    
T  1101062 aagaaaataaaagctaccaatagttatttgtaaaagatgagctctattgagttttaagaagacaaattt 1101130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 46964134 - 46964070
Alignment:
Q  295 aaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||| || |||| || | || |||| |||||||| ||| ||||||||||||||||||||    
T  46964134 aaataaaaacaaaaaataattttttataaaagttgagctcgatggagttttaagaagtcaaattt 46964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 33226597 - 33226675
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||| ||||||||||||| ||||||||| |||| || |||| |||  |||||||||||||||| |||||||||||    
T  33226597 aacgacaatgaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaacaagtcaaattt 33226675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 21017197 - 21017265
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||||| |||||||||||||| || |||| ||||| | |||| ||||||||||||||||||||    
T  21017197 aagaaaataaaagctaacaatagttatttataaaagttgagatatatggagttttaagaagtcaaattt 21017265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 18061103 - 18061171
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    ||||||| |||| |||||||||||||| || |||| ||||||| |||  ||||||||||||||||||||    
T  18061103 aagaaaacaaaagctaacaatagttatttataaaatttgagctatatagagttttaagaagtcaaattt 18061171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 19866052 - 19865995
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    |||||||||||| ||||||||| |||| || |||| ||| ||||||||||||||||||    
T  19866052 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaag 19865995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 19870953 - 19870896
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    |||||||||||| ||||||||| |||| || |||| ||| ||||||||||||||||||    
T  19870953 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaag 19870896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 19875854 - 19875797
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    |||||||||||| ||||||||| |||| || |||| ||| ||||||||||||||||||    
T  19875854 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaag 19875797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 43559817 - 43559741
Alignment:
Q  283 cgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||| |||||||||||||  |||||||| |||| || |||| |||  || ||||||||||||| |||||||||||    
T  43559817 cgacaacgaagaaaataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtcaaattt 43559741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 17508898 - 17508848
Alignment:
Q  200 aatattatatttcagtactgaatattgtacaatcactaatgtgtttatata 250  Q
    ||||||||||||||| | | |||| ||||||| ||||||||||||||||||    
T  17508898 aatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 45040055 - 45040121
Alignment:
Q  293 gaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    ||||||||||  ||||||||||||| |  ||||  ||||||||||| |||||||||||| |||||||    
T  45040055 gaaaataaaaggtaacaatagttatttgtaaaatatgagctctatggagttttaagaagacaaattt 45040121  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 33828389 - 33828321
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||||| |||||||||||||| || |||| |||||||||| | |||||| |||||||||||||    
T  33828389 aagaaaataaaagctaacaatagttatttataaaagttgagctctaaggagtttttagaagtcaaattt 33828321  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 10207929 - 10207998
Alignment:
Q  290 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||| |||||||| ||||||||| |||| || |||| || ||| ||||||||||||||||||||||||||    
T  10207929 gaagcaaataaaatctaacaataattatttaaaaaagttaagccctatgaagttttaagaagtcaaattt 10207998  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 42664127 - 42664196
Alignment:
Q  290 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    ||||||||||||| ||||||||| |||| || |||| |||  |||||||||||||||| |||||||||||    
T  42664127 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaaaaagtcaaattt 42664196  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 41877611 - 41877533
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||| ||||||| || || ||||||||| |||| || |||| ||||| | ||| |||||||||||||||||||||    
T  41877611 aacgacaacgaagaaactataatctaacaataattatttataaaagttgagttttatcaagttttaagaagtcaaattt 41877533  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 44508186 - 44508264
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||| ||||||| ||||| || | |||| |||| || |||| ||||||||||| |||||||||||||||||||||    
T  44508186 aacgacaacgaagaaactaaaatctgaaaataattatttataaaagttgagctctataaagttttaagaagtcaaattt 44508264  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 31067062 - 31067128
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaat 357  Q
    |||||||||||||||||||||| |||| |  |||| |||||||||| | |||||| |||||||||||    
T  31067062 aagaaaataaaaactaacaataattatttttaaaagttgagctctaaggagtttttagaagtcaaat 31067128  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 41336062 - 41335988
Alignment:
Q  285 acaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||| ||||||||||||| ||||||||| |||| || |||| |||| ||||||||| |||||| || ||||||||    
T  41336062 acaacgaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaacttttaacaaatcaaattt 41335988  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 20902902 - 20902845
Alignment:
Q  290 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaa 347  Q
    ||||||||||||| ||||||||| |||| || |||| |||| ||||||||||||||||    
T  20902902 gaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaagttttaa 20902845  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 29790751 - 29790682
Alignment:
Q  290 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    ||||||||||||| ||||||||| |||| || |||| |||  || ||||||||||||| |||||||||||    
T  29790751 gaagaaaataaaatctaacaataattatttataaaagttgtactttatgaagttttaacaagtcaaattt 29790682  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 14144862 - 14144930
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||||| ||||||||| |||| || |||| || ||||||| | |||||| ||| |||||||||    
T  14144862 aagaaaataaaagctaacaatacttatttataaaagttaagctctaaggagtttttagaggtcaaattt 14144930  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 270420 - 270352
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaagtcaaattt 359  Q
    |||||||||||| |||| ||||||||| || |||| |||||||||| | |||||| | |||||||||||    
T  270420 aagaaaataaaagctaaaaatagttatttataaaagttgagctctaaggagtttttaaaagtcaaattt 270352  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 27705294 - 27705359
Alignment:
Q  285 acaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagaa 350  Q
    |||| |||||||||||||||||||||||| ||| ||   ||||| || |||||||||||| |||||    
T  27705294 acaacgaagaaaataaaaactaacaatagatatttatgtaaatttagatctatgaagtttaaagaa 27705359  T

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