View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3520_low_14 (Length: 373)

Name: NF3520_low_14
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3520_low_14
NF3520_low_14
[»] chr6 (7 HSPs)
chr6 (129-346)||(2983801-2984009)
chr6 (222-355)||(2979912-2980045)
chr6 (98-224)||(2996414-2996540)
chr6 (20-97)||(2996309-2996386)
chr6 (221-303)||(2936984-2937065)
chr6 (224-302)||(2657344-2657422)
chr6 (125-165)||(2980097-2980137)
[»] chr4 (1 HSPs)
chr4 (123-178)||(38885775-38885830)
[»] scaffold0024 (2 HSPs)
scaffold0024 (230-291)||(33386-33447)
scaffold0024 (221-277)||(37176-37232)
[»] chr7 (1 HSPs)
chr7 (302-355)||(3346358-3346411)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 129 - 346
Target Start/End: Complemental strand, 2984009 - 2983801
Alignment:
Q  129 atgggtttgagttgcatggttttgcttatgagcctaggtttgctgcaccttttactcctctacttaattatcaatgcttcaaaagtattactgtattgga 228  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||         | |||||    
T  2984009 atgggtttgagttgcatgattttgcttatgagcctaggtttgctacacctgttactcctctacttaattatcaattcttcaaaa---------tgttgga 2983919  T
Q  229 gaattttggttcgttggtttatatgaattaattggttgtaataattttatatctttcttgggtatgaaatattacatgaaaaccgattttcaaccttttt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| | |||  | |||||||||||||     
T  2983918 gaattttggttcgttggtttatatgaattaattggttgtaatatttttatatctttcatgggtataaaatattacacggaaattgtttttcaaccttttc 2983819  T
Q  329 gaaaccaatgataatacc 346  Q
    |||||||| |||||||||    
T  2983818 gaaaccaacgataatacc 2983801  T

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Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 2980045 - 2979912
Alignment:
Q  222 tattggagaattttggttcgttggtttatatgaattaattggttgtaataattttatatctttcttgggtatgaaatattacatgaaaaccgattttcaa 321  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| |||||||    
T  2980045 tattggagaattttggttcattggcttatatgaattaattggttgtaatatttttatatctttcttgggtataaaatattacacggaaaccgtttttcaa 2979946  T
Q  322 cctttttgaaaccaatgataataccggaaaacat 355  Q
    |||||| |||||||||||| ||||||||||||||    
T  2979945 ccttttcgaaaccaatgatgataccggaaaacat 2979912  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 2996414 - 2996540
Alignment:
Q  98 atacacgcagctgcactatatttttgttatgatgggtttgagttgcatggttttgcttatgagcctaggtttgctgcaccttttactcctctacttaatt 197  Q
    |||||||||  |||| | || ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2996414 atacacgcacttgcattctactttggttatgatgggtttgagttgcatggtcttgcttatgagcctaggtttgctgaaccttttactcctctacttaatt 2996513  T
Q  198 atcaatgcttcaaaagtattactgtat 224  Q
    |||||||||||||||||||||||||||    
T  2996514 atcaatgcttcaaaagtattactgtat 2996540  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 2996309 - 2996386
Alignment:
Q  20 ccaccaaggcaaaaggagatgaaagatttcataaagagacgccttcttgaaaactccaaaaaactaccaccaccaacc 97  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996309 ccacaaaggcaaaaggagacgaaagattccataaagagacgccttcttgaaaactctaaaaaactaccaccaccaacc 2996386  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 303
Target Start/End: Complemental strand, 2937065 - 2936984
Alignment:
Q  221 gtattggagaattttggttcgttggtttatatgaattaattggttgtaataattttatatctttcttgggtatgaaatattac 303  Q
    |||| ||| |||||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2937065 gtatcggaaaattttggttggtaggtttatatgcattaattggttg-aataattttatatctttcttgggtataaaatattac 2936984  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 2657344 - 2657422
Alignment:
Q  224 ttggagaattttggttcgttggtttatatgaattaattggttgtaataattttatatctttcttgggtatgaaatatta 302  Q
    |||||||| ||| ||| ||||||||||||| ||||  ||||| ||||||||||||||||||||||||||| ||||||||    
T  2657344 ttggagaaattttgttggttggtttatatgcattacgtggttctaataattttatatctttcttgggtataaaatatta 2657422  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 2980137 - 2980097
Alignment:
Q  125 tatgatgggtttgagttgcatggttttgcttatgagcctag 165  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2980137 tatgatgggtttgagttgcatggttttgcttatgaacctag 2980097  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 38885830 - 38885775
Alignment:
Q  123 gttatgatgggtttgagttgcatggttttgcttatgagcctaggtttgctgcacct 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  38885830 gttatgatgggtttgagttgcatggttttgcttatgagcctaggttggctacacct 38885775  T

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Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 33386 - 33447
Alignment:
Q  230 aattttggttcgttggtttatatgaattaattggttgtaataattttatatctttcttgggt 291  Q
    |||||||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  33386 aattttggttggttggtctatatgcattaattggttgtaatatttttatatctttcttgggt 33447  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 37176 - 37232
Alignment:
Q  221 gtattggagaattttggttcgttggtttatatgaattaattggttgtaataatttta 277  Q
    |||| ||| |||||||||| |||||| |||||| ||||||||||||||||| |||||    
T  37176 gtatcggataattttggttggttggtctatatgcattaattggttgtaatattttta 37232  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 3346411 - 3346358
Alignment:
Q  302 acatgaaaaccgattttcaacctttttgaaaccaatgataataccggaaaacat 355  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||||| |||||||    
T  3346411 acatggaaaccgtttttcaaccttttcgaaaccaatgattataccgaaaaacat 3346358  T

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