View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_2 (Length: 642)
Name: NF3520_low_2
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 35824 - 36402
Alignment:
| Q |
1 |
ttcaaactcgtatgttcatctctatcactcacttttaatgtgtctcctaatatatagatgatattcatatatttatgtcttaactccgcttctacttttt |
100 |
Q |
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| T |
35824 |
ttcaaactcgtatgttcatctctatcactcacttttaatgtgtctcctaatatatagatgatattcatatatttatgtcttcactccgcttctacttttt |
35923 |
T |
|
| Q |
101 |
agttgttcaatctcacattatgcatgttcacagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcactttt |
200 |
Q |
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| T |
35924 |
agttgttcaatctcacattatgcatgttcacagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcactttt |
36023 |
T |
|
| Q |
201 |
caaggaaagtgaaaatttcagtggtggttgtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcacaggtttcacatgtgcatg |
300 |
Q |
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| T |
36024 |
caaggaaagtgaaaatttcagtggtggttgtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcaaaggtttcacatgtgcatg |
36123 |
T |
|
| Q |
301 |
tttagcagttttctctacatctttgcaacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatacgaaagtttttgctatttctgtt |
400 |
Q |
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| T |
36124 |
tttagcagttttctctacatctttgcaacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatatgaaagtttttgctatttctgtt |
36223 |
T |
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| Q |
401 |
gccacattttttaccagacaccattta---------------tgataagtatagataatggttgaaaacggacttcactagatttagaatcattaccgga |
485 |
Q |
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| T |
36224 |
gccacattttttaccagacaccatttatgaatcatgaattggtgataagtatagataatggttg-aaacggacttcactagatttagaatcattaccgga |
36322 |
T |
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| Q |
486 |
agcattgttttttaccttttaatcgtcattattaaatgatgatgagtatgagagaatatgagaacttaagttctactattaca |
568 |
Q |
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| T |
36323 |
agcattgttttttaccttttaatcgtcattattaa---atgatgagtatgagagaatatgagaacttacgttctactattaca |
36402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 8676696 - 8676538
Alignment:
| Q |
130 |
acagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcagtggtggtt |
229 |
Q |
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||||||||||||| | || |||||||| ||||||||||| |||||| |||| ||||||| ||| |||| |||||| |||||||| | || || ||||| |
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| T |
8676696 |
acagatatcaaaactaagcatgattccggtggtttgtgtgatggaatggatccttcacagcaaacactactcaagggaagtgaaagtgtcggtcatggtt |
8676597 |
T |
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| Q |
230 |
gtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcacaggttt |
288 |
Q |
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| T |
8676596 |
gtggttattggtgttggtgtttgcaccgtaactgatgtaaatgttaacttcaaaggttt |
8676538 |
T |
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