View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_20 (Length: 293)
Name: NF3520_low_20
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_20 |
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| [»] scaffold0045 (5 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 176; Significance: 8e-95; HSPs: 5)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 36040 - 35808
Alignment:
| Q |
18 |
gaaagcggttcaaattggcttagatgtaactgaacgcaatccaattttcatgattttttcttcacagtctgctgaactttacctcgaccccatcaaccgg |
117 |
Q |
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| T |
36040 |
gaaaacggttcaaattggcttagatgtaactgaacacaatccaattttcatgattttttcttcacaatctgctgaacttgacctcgaccccatcaaccgg |
35941 |
T |
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| Q |
118 |
agcaggatgtgaaagataaactatatctgcgtttggattaataagctcccacctacattaaattgataaatatatat-nnnnnnnttagatagtagctca |
216 |
Q |
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| T |
35940 |
agcaggatgtgaaagataaactatatctgcgtttggattaataagctcccacctgcattaaattgataaatatatataataaaaattagatagtagctca |
35841 |
T |
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| Q |
217 |
aaattatgccgagattatgttttaaataaaatt |
249 |
Q |
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| T |
35840 |
aaattatgccgagattatgttttagaaaaaatt |
35808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 53108 - 52938
Alignment:
| Q |
23 |
cggttcaaattggcttagatgtaactgaacgcaatccaattttcatgattttttcttcacagtctgctgaactttacctcgaccccatcaaccggagcag |
122 |
Q |
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||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| ||||| | |||||||| | ||||||||||||||||||||||||| |
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| T |
53108 |
cggttcaaactggcttagatgcgattgaacacaatccaattttcatgattttttcctcacaatttgctgaacctgacctcgaccccatcaaccggagcag |
53009 |
T |
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| Q |
123 |
gatgtgaaagataaactatatctgcgtttggattaataagctcccacctacattaaattgataaatatatat |
194 |
Q |
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| T |
53008 |
catgtgaaa-atgaattatatctgcatttggattaataagctcctacctgcattaaatttatcaatatatat |
52938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 21353 - 21171
Alignment:
| Q |
18 |
gaaagcggttcaaattggcttagatgta--actgaacgcaatccaattttcatgattttttcttcacagtctgctgaactttacctcgaccccatcaacc |
115 |
Q |
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| T |
21353 |
gaaaacggttcaaactggcttagatgtgtgaatgaatacaatccaattttcatgattttttcttcacaatttgctgaacctgacctcaaccccatcaacc |
21254 |
T |
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| Q |
116 |
ggagcaggatgtgaaagataaa----ctatatctgcgtttggattaataagctcccacctacattaaattgataaatatatat |
194 |
Q |
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| T |
21253 |
ggaacagcatgtgaaagataaattatatatatttgcgtttggattaataagctcccacctgcattaaattgataaatatatat |
21171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 28156 - 28040
Alignment:
| Q |
62 |
ttttcatgattttttcttcacagtctgctgaactttacctcgaccccatcaaccggagcaggatgtgaaagataaactatatctgcgtttggattaataa |
161 |
Q |
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| T |
28156 |
ttttcatggttttttcttcacaatttgctgaacttgacctcaaccccatcaacaggagcaggatgtgaaagataaattatatctgcatttggattaataa |
28057 |
T |
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| Q |
162 |
gctcccacctacattaa |
178 |
Q |
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| T |
28056 |
gctcccacctgcattaa |
28040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 43904 - 43805
Alignment:
| Q |
71 |
ttttttcttcacagtctgctgaactttacctcgaccccatcaaccggagcaggatgtgaaagataaactatatctgcgtttggattaataagctcccacc |
170 |
Q |
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||||||||||||| | |||||||||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
43904 |
ttttttcttcacaatttgctgaacttgacctcaaccccatcaactggagcaggatgcgaaagataaattatatctgcgtttggattaatgagctcccacc |
43805 |
T |
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