View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_21 (Length: 280)
Name: NF3520_low_21
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 30092144 - 30091944
Alignment:
| Q |
10 |
aagaatattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcgtccatgtgcaacttcaaactgattggagctagatctttcaaca |
109 |
Q |
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| T |
30092144 |
aagaaaattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaaca |
30092045 |
T |
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| Q |
110 |
aaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaa |
209 |
Q |
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| T |
30092044 |
aaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaa |
30091945 |
T |
|
| Q |
210 |
c |
210 |
Q |
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| |
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| T |
30091944 |
c |
30091944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 30098722 - 30098922
Alignment:
| Q |
10 |
aagaatattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcgtccatgtgcaacttcaaactgattggagctagatctttcaaca |
109 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||| ||||||||||||||| |||||||| |
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| T |
30098722 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
30098821 |
T |
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| Q |
110 |
aaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaa |
209 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||| ||||||||||| |
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| T |
30098822 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaactgttgcaggtaa |
30098921 |
T |
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| Q |
210 |
c |
210 |
Q |
| |
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| |
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| T |
30098922 |
c |
30098922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 30088186 - 30087983
Alignment:
| Q |
10 |
aagaatattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcgtccatgtgcaacttcaaactgattggagctagatctttcaaca |
109 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| | |
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| T |
30088186 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccgtgtgcaacttcaaactgattggagcaagatctttcaata |
30088087 |
T |
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| Q |
110 |
aaggtgtgattgc---ttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcagg |
206 |
Q |
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| T |
30088086 |
aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagagacagtatcggacatggaactcatacatcatcaactgttgcagg |
30087987 |
T |
|
| Q |
207 |
taac |
210 |
Q |
| |
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|||| |
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| T |
30087986 |
taac |
30087983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 30087958 - 30087915
Alignment:
| Q |
219 |
atagacaaatgttagcaaattatgttagtttcttggttagtact |
262 |
Q |
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| T |
30087958 |
atagacaaatagtaacaaattatgttagtttcttggttagtact |
30087915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 35171713 - 35171617
Alignment:
| Q |
70 |
atgtgcaacttcaaactgattggagctagatctttcaacaaaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagaca |
166 |
Q |
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| T |
35171713 |
atgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagaca |
35171617 |
T |
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