View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_22 (Length: 278)
Name: NF3520_low_22
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 13069036 - 13068773
Alignment:
| Q |
1 |
taaatgaatattttttgtattttaagtattgagggaacacatttttt-acgtgaatatgcatgtctatggagtgtcaacttatatgaataatttgacatt |
99 |
Q |
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| T |
13069036 |
taaatgaatattttttgtattttaagtattgagggaacacatttttttacgtgaatatgcatgtctatggagtgtcaacttatatgaataatttgacatt |
13068937 |
T |
|
| Q |
100 |
gtaatttcaaagagcatgattcaaaatttgccaagaaaatttgtaaaataatcacaatat-taccactttaattgataatacttttctcctttgtgtaat |
198 |
Q |
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| T |
13068936 |
gtaatttcaaagagcatgattcaaaatttgccaagaaaaattgtaaaataatcacaatatataccactttaattgataatacttttctcctttgtgtaat |
13068837 |
T |
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| Q |
199 |
aatttgtaaaagcaagaagattgcaattacttacgtgagccagtaacttcccaaagctgcattt |
262 |
Q |
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| T |
13068836 |
aatttgtaaaagcaagaagattgcaattacttacgtgagccagtaacttcccaaagctgcattt |
13068773 |
T |
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