View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3520_low_3 (Length: 639)
Name: NF3520_low_3
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 138 - 629
Target Start/End: Complemental strand, 20810626 - 20810135
Alignment:
| Q |
138 |
gagagttcgctaaatttgtctctagggtttggtcgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810626 |
gagagttcgctaaatttgtctctagggtttggttgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
20810527 |
T |
|
| Q |
238 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810526 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttt |
20810427 |
T |
|
| Q |
338 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| |
|
|
| T |
20810426 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttatttttccccaatgcaacaccatgaatc |
20810327 |
T |
|
| Q |
438 |
ttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaac |
537 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810326 |
ttctgctttatttcaaagagatctaaaagaagttgtttttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaac |
20810227 |
T |
|
| Q |
538 |
ttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatg |
629 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810226 |
ttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgcctgatccacccattccccatatccctatg |
20810135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 138 - 629
Target Start/End: Complemental strand, 20836981 - 20836490
Alignment:
| Q |
138 |
gagagttcgctaaatttgtctctagggtttggtcgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20836981 |
gagagttcgctaaatttgtctctagggtttggttgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
20836882 |
T |
|
| Q |
238 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
20836881 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggatttgcacacagtgcttt |
20836782 |
T |
|
| Q |
338 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatc |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||| ||| |||||| |
|
|
| T |
20836781 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtcgctggagtcttgtcatgattttagttttccccaatgcaatactgtgaatc |
20836682 |
T |
|
| Q |
438 |
ttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaac |
537 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20836681 |
ttctgttttatttcaaggagatctaaaagaagttgttcttgtaaagtaataacccctccactattattatcacaaacttctctaatactttcaaggaaac |
20836582 |
T |
|
| Q |
538 |
ttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatg |
629 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20836581 |
ttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgcctaatccacccattccccatatccctatg |
20836490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 20839649 - 20839530
Alignment:
| Q |
19 |
atcttatcattctatgcaaagcattagcagtactgttgtcgattctttatgaatagacgtatgcaacaactcgaac-nnnnnnnnctaataaagggttac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20839649 |
atcttatcattctatgcaaagcattagcagtactgttgtcgattctttatgaatagacgtatgcaacaactcgaactttttttttctaataaagggttac |
20839550 |
T |
|
| Q |
118 |
attatggaaacatttagctt |
137 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20839549 |
attatggaaacatttagctt |
20839530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 20813105 - 20813067
Alignment:
| Q |
35 |
caaagcattagcagtactgttgtcgattctttatgaata |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20813105 |
caaagcattagcagtactgttgtcgattctttatgaata |
20813067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 156 - 628
Target Start/End: Complemental strand, 31174352 - 31173880
Alignment:
| Q |
156 |
tctctagggtttggtcgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatg |
255 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||| ||||||||||||||| |||| |||||||||||| ||||| ||| ||| |||||| | ||| || |
|
|
| T |
31174352 |
tctctaggatttggttgttgaaaagcatgccaacagaaaagttcaagggactggtatttgtccatttccgtcattgtgaagatatggtcgtcactaagtg |
31174253 |
T |
|
| Q |
256 |
acttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggt |
355 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||||| |||||||||||||| | |||| |
|
|
| T |
31174252 |
agttgagaaggcgtgcatctctagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacagggcttttaattgctcgggtgtggt |
31174153 |
T |
|
| Q |
356 |
cacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaagg |
455 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||| || || ||||| ||||| || ||| |||||||||| || ||||||| ||| |
|
|
| T |
31174152 |
cacatcatcgagtacgatgaaagccttttgtcctcgaagtcttttctctatcttagtcatccccaatgcaatgctatgaatctcttgttttatttgcagg |
31174053 |
T |
|
| Q |
456 |
agatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatc |
555 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||| || | |
|
|
| T |
31174052 |
agatctaaaagaagttgttgttgtaaatgaataacccctctagaattattatcacaaacttctcgaatactttcaaagaaacttgttctaccttcaaacc |
31173953 |
T |
|
| Q |
556 |
tacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctat |
628 |
Q |
| |
|
|||||||||||| |||||||| | |||||| ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
31173952 |
tacgatggattttattgtagatagctttggctgtggttgttttcccggatccacccattccccatatccctat |
31173880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 173 - 628
Target Start/End: Original strand, 3400213 - 3400668
Alignment:
| Q |
173 |
ttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaa |
272 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||| || ||||||||| ||||| ||| ||| ||||||| | ||| ||| |||||||||||| | |
|
|
| T |
3400213 |
ttgaaaagcatgccaacagaaaagttcaagggactggtcttcgtccatttctgtcattgtgaagatatggtcaccactaagtgatttgagaaggcgtcca |
3400312 |
T |
|
| Q |
273 |
tctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggtcacatcatcgagtacga |
372 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||||| ||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
3400313 |
tctctagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacaggttttttaattgctcagatgtggtcacatcatcaagtatga |
3400412 |
T |
|
| Q |
373 |
ccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaaggagatctaaaagaagttg |
472 |
Q |
| |
|
| ||||| ||||||| |||||||| || || |||||| |||| | ||| |||||||||| || ||||||| | |||||||||||||||||| |
|
|
| T |
3400413 |
caaaaactgtttgtcctcgaagtcttttctcaatcttagttatccctgaggcaatgctatgaatctcttgttttattttcaagagatctaaaagaagttg |
3400512 |
T |
|
| Q |
473 |
ttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatctacgatggatttgattg |
572 |
Q |
| |
|
|| |||||||| |||| |||||||| ||||||||||||||||||||| ||||||||| | |||||||| ||||| | |||||| | ||||||||||| |
|
|
| T |
3400513 |
ttgttgtaaaggaataacccctctattattattatcacaaacttctcgaatactttcgatgaaacttgctctacccttaaatctagaacggatttgattg |
3400612 |
T |
|
| Q |
573 |
tagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctat |
628 |
Q |
| |
|
|||| | |||||| |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3400613 |
tagatagctttggccgtggttgttttcccggatccacccattccccatatccctat |
3400668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 3397496 - 3397546
Alignment:
| Q |
39 |
gcattagcagtactgttgtcgattctttatgaatagacgtatgcaacaact |
89 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3397496 |
gcattagcagtactgttgtcacttctttatgaatagacgtatgcaacaact |
3397546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 175 - 621
Target Start/End: Original strand, 8373325 - 8373768
Alignment:
| Q |
175 |
gaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaatc |
274 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | || ||| ||||||||| |||| ||| |||| || || ||| ||| | |||| ||| | ||| |
|
|
| T |
8373325 |
gaaaagcatgccagctgaaaagttcaagggactcgtttttatccatttcaatcattgtgaagacgcgggcac---taagtgaatcgagatggcttcgatc |
8373421 |
T |
|
| Q |
275 |
tctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggtcacatcatcgagtacgacc |
374 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8373422 |
tctagttgtaataatcaatacacttcctgaaccaaacaacttaggatttccacccagagcttttaattgctcagacttggtcacatcatcaagtacgatt |
8373521 |
T |
|
| Q |
375 |
aaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaaggagatctaaaagaagttgtt |
474 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| || ||||| | ||| ||||| ||||| | ||| ||| ||||||||| |||||||||||| |
|
|
| T |
8373522 |
aaaaccttttgtccctgaagtcttttctcgatcttatttatccccactgcaatgctatgtatcttatcttttgtttttaggagatctgaaagaagttgtt |
8373621 |
T |
|
| Q |
475 |
cttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatctacgatggatttgattgta |
574 |
Q |
| |
|
| |||||| |||| |||| | ||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||| |||||||||| ||||||| |
|
|
| T |
8373622 |
cctgtaaatgaataatcccttttctattataatcacaaacttctcgaatactttcaatgaaacttgttttaccctggaattcacgatggattcgattgta |
8373721 |
T |
|
| Q |
575 |
gagacctttggtcgtggttgttttgcctgatccacccattccccata |
621 |
Q |
| |
|
|| | |||||| | ||| ||||| || ||||||||||||||||||| |
|
|
| T |
8373722 |
gatagctttggccaaggtagttttcccggatccacccattccccata |
8373768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 177 - 372
Target Start/End: Original strand, 31060429 - 31060624
Alignment:
| Q |
177 |
aaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaatctc |
276 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| || | ||||||| ||| ||| ||||||||||| | ||| ||| ||||||||| || ||||| |
|
|
| T |
31060429 |
aaagcatgccaactgaaaagttcaagtgactggttttcgaccatttctaccattgtgaagacatggtcagcactaagtgatttgagaaggtgttcatctc |
31060528 |
T |
|
| Q |
277 |
tagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggtcacatcatcgagtacga |
372 |
Q |
| |
|
| || |||| |||||||||| | | |||||| || |||||| |||| ||||||| |||||||||| | || |||||||||||||||| ||||||| |
|
|
| T |
31060529 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatttcccaaacttggtcacatcatcaagtacga |
31060624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 628
Target Start/End: Original strand, 32412971 - 32413011
Alignment:
| Q |
588 |
gtggttgttttgcctgatccacccattccccatatccctat |
628 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
32412971 |
gtggttgttttacctgatccccccattccccaaatccctat |
32413011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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