View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_30 (Length: 223)
Name: NF3520_low_30
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 25615594 - 25615377
Alignment:
| Q |
2 |
ttagttgggatcgtgttttggaggtagcctctaaacaaaaattgaagcttccgttggaattaaattgttcccaacatccattttatgtatgattttccaa |
101 |
Q |
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| T |
25615594 |
ttagttgggatcgtgttttggaggtagcctctaaacaaaaattgaagcttccgttggaattaaattgttcccaacatccattttatgtatgattttccaa |
25615495 |
T |
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| Q |
102 |
gagttctgtaacatctgaagcaacctaaaataaataaaggaatgccaaacaaaattacaaattcaaggacatcgaacatagaaagaatttatgtaataca |
201 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25615494 |
gagttctttaacatctggagcaacctaaaataaataaaggaatgccaaacaaaattacaaattcaaggacatcgaacatagaaagaatttatgtaataca |
25615395 |
T |
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| Q |
202 |
ttgagaacaaaaatttca |
219 |
Q |
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|||||||||||||||||| |
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| T |
25615394 |
ttgagaacaaaaatttca |
25615377 |
T |
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