View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3520_low_7 (Length: 459)
Name: NF3520_low_7
Description: NF3520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3520_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 33415514 - 33415888
Alignment:
| Q |
20 |
actttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggcaannnnnnnnnnnngttgcatgttttgctttcttg |
119 |
Q |
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| T |
33415514 |
actttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggctatattttttttt-gttgcatgttttgctttcttg |
33415612 |
T |
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| Q |
120 |
aataatcatcaatcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaa |
219 |
Q |
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| T |
33415613 |
aataatca---atcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaa |
33415709 |
T |
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| Q |
220 |
gcatgagtacttgaaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgac- |
318 |
Q |
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| T |
33415710 |
gcatgagtacttgaaaaaatgaagtatttgtatcaaat--acgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgact |
33415807 |
T |
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| Q |
319 |
ttatgatacataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagcaaaccacattttcttaaaa |
399 |
Q |
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| T |
33415808 |
ttatgatagataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagaaagccacattttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
203 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
297 |
Q |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
298 |
gttgtaagtgaaatttgtg |
316 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
183 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
238 |
Q |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33397852 - 33397901
Alignment:
| Q |
151 |
aaaaaattataatcatttatgggatgattcccatattgtggtttttagat |
200 |
Q |
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| T |
33397852 |
aaaaaagtataataatttatggggtgatttgcatattgtggtttttagat |
33397901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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