View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3521_high_1 (Length: 1002)
Name: NF3521_high_1
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3521_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 923; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 923; E-Value: 0
Query Start/End: Original strand, 17 - 995
Target Start/End: Original strand, 3701729 - 3702707
Alignment:
| Q |
17 |
atatctaatggtggtggttcacagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701729 |
atatctaatggtggtggttcacagagaaggctatgggtgaaggatcgttccggggcatggtgggatgaatgtaataaagaagattttcctgaagatgagt |
3701828 |
T |
|
| Q |
117 |
ttaagaaagcttttagaatgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701829 |
ttaagaaagcttttagaatgggaaaatcaacttttgattttatttgtgaaaaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaat |
3701928 |
T |
|
| Q |
217 |
tccagtgagacaaagagtagctgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701929 |
tccagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgt |
3702028 |
T |
|
| Q |
317 |
cataaacttgttcttgaagtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
3702029 |
cataaacttgttcttgaagtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaagaatg |
3702128 |
T |
|
| Q |
417 |
agtttgagggtatgtcaggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702129 |
agtttgagggtatgtcaggtattccaaatgttgtagggtccatgtatacatcacatgttccaatcatagctcctaagattagtgttgctgattattttaa |
3702228 |
T |
|
| Q |
517 |
caagagacatactgagaggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttgg |
616 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702229 |
cagaagacatactgagaggaatcaaaagacttcatattcaataactgttcaaggtgttgttgatacaaatggtgttttcactgatgtttgtattggttgg |
3702328 |
T |
|
| Q |
617 |
cctggttcaatgcctgatgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagtt |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702329 |
cctggttcaatgcctgatgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagtt |
3702428 |
T |
|
| Q |
717 |
cagggtatcctttaatggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaa |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3702429 |
cagggtatcctttaatggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgaaaagattggtgagatacaaaa |
3702528 |
T |
|
| Q |
817 |
agttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgct |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702529 |
agttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgct |
3702628 |
T |
|
| Q |
917 |
tgttgtgttttgcataacatttgtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatg |
995 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702629 |
tgttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatg |
3702707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 19 - 995
Target Start/End: Original strand, 3698043 - 3699019
Alignment:
| Q |
19 |
atctaatggtggtggttcacagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3698043 |
atctaatggtggtggttcacagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgtaacaaagaagattttcctgaagatgagttt |
3698142 |
T |
|
| Q |
119 |
aagaaagcttttagaatgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattc |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698143 |
aagaaagcatttagaatgggaaaatcaacttttgatttgatttgtgaagaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattc |
3698242 |
T |
|
| Q |
219 |
cagtgagacaaagagtagctgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698243 |
cagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaaaggtttggtttaggtatatcaacttgtca |
3698342 |
T |
|
| Q |
319 |
taaacttgttcttgaagtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3698343 |
taaacttgttcttgaagtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaaaaatgag |
3698442 |
T |
|
| Q |
419 |
tttgagggtatgtcaggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaaca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3698443 |
tttgagggtatgtcaggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgcttattttaaca |
3698542 |
T |
|
| Q |
519 |
agagacatactgagaggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3698543 |
agagacatactgagaggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgcattggttggcc |
3698642 |
T |
|
| Q |
619 |
tggttcaatgcctgatgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttca |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
3698643 |
tggttcaatgcctgatgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttcttaaaggtgtttggattgttggaagttca |
3698742 |
T |
|
| Q |
719 |
gggtatcctttaatggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaag |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698743 |
gggtatcctttaatggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaag |
3698842 |
T |
|
| Q |
819 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttg |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
3698843 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttg |
3698942 |
T |
|
| Q |
919 |
ttgtgttttgcataacatttgtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatg |
995 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698943 |
ttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatg |
3699019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 731 - 945
Target Start/End: Original strand, 17602680 - 17602894
Alignment:
| Q |
731 |
atggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatg |
830 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||| || |||||||||||||| || ||||||| |||||||| || | ||| ||| |||||||| |
|
|
| T |
17602680 |
atggattgggttttagtgccatataagcaccaaaatctgacgtggacacaacatggatttaatgagagaattggtgaaattgagaaaattggtaaagatg |
17602779 |
T |
|
| Q |
831 |
catttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgca |
930 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||||| |||||||||||||| | ||| | |||||||| ||||||| ||| ||||||||||||| | || |
|
|
| T |
17602780 |
cttttagtaggttgaaaggtaggtgggggtgtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttca |
17602879 |
T |
|
| Q |
931 |
taacatttgtgagat |
945 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
17602880 |
taatatttgtgagat |
17602894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 551 - 629
Target Start/End: Original strand, 17602503 - 17602581
Alignment:
| Q |
551 |
tattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgc |
629 |
Q |
| |
|
|||||| ||||||||||||| || || ||| || |||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
17602503 |
tattcagtaactgttcaaggtgtggtaaatagtaaaggtgtttttactgatgtgtgtataggttggcctggctcaatgc |
17602581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 843 - 947
Target Start/End: Complemental strand, 52250869 - 52250765
Alignment:
| Q |
843 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
942 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
52250869 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
52250770 |
T |
|
| Q |
943 |
gatga |
947 |
Q |
| |
|
|||| |
|
|
| T |
52250769 |
aatga |
52250765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 819 - 947
Target Start/End: Complemental strand, 52262535 - 52262407
Alignment:
| Q |
819 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
917 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| |||||||| || ||||| || ||||| || | ||||||||| || || | ||||| |
|
|
| T |
52262535 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
52262437 |
T |
|
| Q |
918 |
gttgtgttttgcataacatttgtgagatga |
947 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
52262436 |
gttgtgttttgcataatatttgtgagatga |
52262407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 52251470 - 52251370
Alignment:
| Q |
239 |
gtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagttt |
338 |
Q |
| |
|
|||||| | |||||||| || || ||||||||||| || | |||||||| ||||| ||||| |||||||| || |||||||| || |||||||| |||| |
|
|
| T |
52251470 |
gtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagctggttcttgaggttt |
52251371 |
T |
|
| Q |
339 |
g |
339 |
Q |
| |
|
| |
|
|
| T |
52251370 |
g |
52251370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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