View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3521_high_4 (Length: 519)
Name: NF3521_high_4
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3521_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 34314499 - 34314861
Alignment:
| Q |
9 |
gagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaagg |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
34314499 |
gagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccggagaatgctgattttgattccgtgaagg |
34314598 |
T |
|
| Q |
109 |
ctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatga |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314599 |
ctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatga |
34314698 |
T |
|
| Q |
209 |
gaaatcaggcaaacttaataatgatggggctaataacattgaactttgaaataagctttttaattctatgtttagtttgaataatgggatttcacctagg |
308 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
34314699 |
gaaatcaggcaagcttaataatgatggggctaataccactgaactttgaaataagctttttaattctatgtttggtttgaataaagggatttcacctagg |
34314798 |
T |
|
| Q |
309 |
atttggttgttagtgtgatgaaattaatcacttgtttgatggttagtgttgtagagggtttag |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314799 |
atttggttgttagtgtgatgaaattaatcacttgtttgatggttagtgttgtagagggtttag |
34314861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 34317255 - 34316824
Alignment:
| Q |
8 |
tgagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaag |
107 |
Q |
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|||||| ||||||||||||||||| | || ||||||| |||| |||||||||||||||||| | ||||||||||||||||||||||| ||||| | ||| |
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| T |
34317255 |
tgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtacggaaaattctggagacagttaagattgccagagaatgctgatttggattcaattaag |
34317156 |
T |
|
| Q |
108 |
gctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatg |
207 |
Q |
| |
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||||| ||||||||| ||||||| ||||||| |||||||| |||| |||| | |||| ||| || | |||||||| ||| ||||| ||| |
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| T |
34317155 |
gctaataaggaaaatggagttcttactttgacatttaataagttgtcgcatgg---taagatcaaaggttct-----tgttagcaaggatgaggaggatg |
34317064 |
T |
|
| Q |
208 |
agaaatcaggcaaacttaataatgatggggctaataacattgaactttgaaataagctttttaattctatgtttagtttgaataatgggatttcacctag |
307 |
Q |
| |
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||||||||||||| | |||||| |||||| || || || |||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |
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| T |
34317063 |
agaaatcaggcaagatcaataataatggggatagtagcactgaactttgaaataagctttttaaatctatgtttggtttgaataaagggattttacctaa |
34316964 |
T |
|
| Q |
308 |
gatttggttgttagtgtgatgaaattaatcacttgtttgatggttagtgttgtagagggtttagaattctctatagctagttgggttttgtgt-tttgta |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| | |||| |
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| T |
34316963 |
gatttagttgttagtgtgatgaaattaatcacttgtttgatgattagtgttgtagagggtttagaaatctctatagctagttaggttttatgtctctgta |
34316864 |
T |
|
| Q |
407 |
cctttatcttttatgtttgatacttcttgaattgaatggt |
446 |
Q |
| |
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|||||| || |||||||||| || ||||||||||||||| |
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|
| T |
34316863 |
gctttattttgtatgtttgatgctccttgaattgaatggt |
34316824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 34304735 - 34304486
Alignment:
| Q |
9 |
gagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| || ||||||||||| ||||||||||||| |
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| T |
34304735 |
gagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggaggcaatttagattgcctgaaaatgctgatttggattctgtgaagg |
34304636 |
T |
|
| Q |
109 |
ctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatga |
208 |
Q |
| |
|
||||| | |||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
34304635 |
ctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatg---atcagattaaaagtactagagttgttagcattgatgaggagaatga |
34304539 |
T |
|
| Q |
209 |
gaaatcaggcaaacttaataatgatggggctaataacattgaactttgaaata |
261 |
Q |
| |
|
||||||| ||| | || ||||||||||||||||||| ||| |||||||||| |
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| T |
34304538 |
gaaatcacccaaggtcaacaatgatggggctaataacaatgagctttgaaata |
34304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 33426336 - 33426586
Alignment:
| Q |
9 |
gagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaagg |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||||||||| ||||| || |||| |
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| T |
33426336 |
gagaaaaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggagacagtttagattgcctgaaaatgctgatttggattcggttaagg |
33426435 |
T |
|
| Q |
109 |
ctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatga |
208 |
Q |
| |
|
| ||| |||||||||||||||||| ||| |||||| |||| |||| |||| | |||||||||||| |||| ||||||||||||| |||||||||| |
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|
| T |
33426436 |
ccaagatggaaaatggtgttcttactttaacacttcgtaagttgtcacatg---gtaagattaaaagtactagacttgttagcattgaggaggagaatga |
33426532 |
T |
|
| Q |
209 |
gaaatcaggcaaacttaataatgatggggctaataacattgaactttgaaataa |
262 |
Q |
| |
|
|||| || |||| |||| |||||| ||||||||||| ||| ||| ||||||| |
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|
| T |
33426533 |
gaaagcaagcaagcttagcgatgatgaggctaataacaatgagcttggaaataa |
33426586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 34322903 - 34322759
Alignment:
| Q |
16 |
aaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggt |
115 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| ||||||||||| || |||||||||| || |||| |||||| ||||| |||||||||||| | |
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| T |
34322903 |
aaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggctaagat |
34322804 |
T |
|
| Q |
116 |
ggaaaatggtgttcttattttgacacttaataagctgtcccatga |
160 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| ||||| |
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|
| T |
34322803 |
ggaaaatggtgtacttactttgacacttaataagttgtcacatga |
34322759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 34312068 - 34312206
Alignment:
| Q |
16 |
aaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggt |
115 |
Q |
| |
|
||||||||| |||||| |||| |||||| ||||||||||||||||| || ||||||||||||| |||| |||||| || || || |||||||| | |
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|
| T |
34312068 |
aaggtgatcattggcacagagttgaaagatcttatggaaaattctggaggcaatttagattgccagaaaatgttgatttggactcagttaaggctaaaat |
34312167 |
T |
|
| Q |
116 |
ggaaaatggtgttcttattttgacacttaataagctgtc |
154 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
34312168 |
ggaaaatggtgtacttactttgacacttaataagttgtc |
34312206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 34314862 - 34314914
Alignment:
| Q |
395 |
ttgtgttttgtacctttatcttttatgtttgatacttcttgaattgaatggta |
447 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34314862 |
ttgtgttttgtagctttatcttttatgtttgatacttcttgaattgaatggta |
34314914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 25651371 - 25651248
Alignment:
| Q |
9 |
gagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaagg |
108 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||| |||| |||||| ||||| | ||| |
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|
| T |
25651371 |
gagaacaaaagtgatcgttggcatagagttgaaaggatgtgtggaaaattctggagacaacttagattaccagaaaatgttgatttggattcgattaaga |
25651272 |
T |
|
| Q |
109 |
ctaaggtggaaaatggtgttctta |
132 |
Q |
| |
|
| ||| ||||| |||||||||||| |
|
|
| T |
25651271 |
caaagatggaagatggtgttctta |
25651248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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