View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3521_high_7 (Length: 316)
Name: NF3521_high_7
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3521_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 46246636 - 46246339
Alignment:
| Q |
1 |
ggccattgatccatttatagtataccctattgtaattcttagttataacaagcaagtcaatgcaattaccaaataccaacccaaatttac---atttcca |
97 |
Q |
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| T |
46246636 |
ggccattgatccatttatagtataccctattgtaattcttagttataacaagcaagtcaatgcaattaccaaataccaacccaaatttacattatttcca |
46246537 |
T |
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| Q |
98 |
gatttttgataggaccgatttccaccccatacaatggaaatccnnnnnnnggtacaatttcatctaatgagaaaaatctttagccaaatagtgaatggtt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46246536 |
gatttttgataggaccgatttccaccccatacaatggaaatccaaaaaaaggtacaatttcatctaatgagaaaaatctttagccaaatagtgaatgatt |
46246437 |
T |
|
| Q |
198 |
taacccaaatttcgtgatgccaaccttttttccctcnnnnnnnnnnnnnnnttcatcatctattctaatccactcctatataacccttcacattcccata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46246436 |
taacccaaatttcgtgatgccaaccttttttccctc---aaaaaaacaaaattcatcatctattctaatccactcctatataacccttcacattcccata |
46246340 |
T |
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