View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3521_high_9 (Length: 290)
Name: NF3521_high_9
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3521_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 23597572 - 23597842
Alignment:
| Q |
1 |
tggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597572 |
tggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaa |
23597671 |
T |
|
| Q |
101 |
aattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597672 |
aattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatt |
23597771 |
T |
|
| Q |
201 |
tgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatgg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597772 |
tgcaaccctatcattgcaaggatgtatcaaggtgctggtggtgatgctggaggagccatggatgaggatgg |
23597842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 23588720 - 23588991
Alignment:
| Q |
1 |
tggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaa |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23588720 |
tggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaa |
23588819 |
T |
|
| Q |
101 |
aattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23588820 |
aattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatt |
23588919 |
T |
|
| Q |
201 |
tgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23588920 |
tgcaaccctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggt |
23588991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 8018423 - 8018633
Alignment:
| Q |
24 |
aactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgaggggg |
123 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| ||||||| ||| ||| | || |||| || || ||||| ||||| ||||| ||||| | | |
|
|
| T |
8018423 |
aactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatgatgcaattgacgctg |
8018522 |
T |
|
| Q |
124 |
ctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggat |
223 |
Q |
| |
|
| ||||| |||||||| | || || | | |||||||||||| ||||| || ||||||||||| || ||| | |||||||||| |||||||| | ||| |
|
|
| T |
8018523 |
caattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagat |
8018622 |
T |
|
| Q |
224 |
gtatcaaggtg |
234 |
Q |
| |
|
||||||||||| |
|
|
| T |
8018623 |
gtatcaaggtg |
8018633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
150 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
234 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| || || ||| | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 8101828 - 8101615
Alignment:
| Q |
21 |
gagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgagg |
120 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || |||||||| ||||| ||| ||| | || | | || |||||| | ||||| ||||| ||||||| |
|
|
| T |
8101828 |
gagaactatgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagg |
8101729 |
T |
|
| Q |
121 |
gggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaag |
220 |
Q |
| |
|
| || ||||||||| | |||| ||| || |||| || || ||||| ||||| ||||||||||||||||| ||| || || ||||| |||||||||| |
|
|
| T |
8101728 |
gagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaa |
8101629 |
T |
|
| Q |
221 |
gatgtatcaaggtg |
234 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
8101628 |
gatgtaccaaggtg |
8101615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 17706803 - 17706893
Alignment:
| Q |
144 |
aatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
234 |
Q |
| |
|
||||| |||| |||||| ||||| |||||||||||||||||||| | || ||| | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
17706803 |
aatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University