View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3521_low_13 (Length: 224)

Name: NF3521_low_13
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3521_low_13
NF3521_low_13
[»] chr7 (1 HSPs)
chr7 (17-200)||(11901560-11901743)
[»] scaffold0007 (1 HSPs)
scaffold0007 (99-193)||(44527-44621)
[»] chr5 (1 HSPs)
chr5 (107-193)||(24121976-24122062)
[»] chr4 (2 HSPs)
chr4 (112-181)||(47869713-47869782)
chr4 (112-159)||(8924097-8924144)
[»] chr8 (1 HSPs)
chr8 (159-193)||(43616739-43616773)
[»] chr3 (2 HSPs)
chr3 (112-181)||(9464351-9464420)
chr3 (115-159)||(2741173-2741217)
[»] chr2 (1 HSPs)
chr2 (115-159)||(21803482-21803526)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 11901743 - 11901560
Alignment:
Q  17 aagaagtgcgggggaggttttagaggtttactgattcaaccaaaatttgtgtgacggtatcccaaaaccgtgaacaatgagtatctacagccggattcaa 116  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||| || ||||| ||| |   |||||    
T  11901743 aagaagtgtgtgggaggttttagaggtttactgattcaaccaaaatttatgtgacagtatcccaaaatcgtggacaacgattatctgcagtcaagttcaa 11901644  T
Q  117 ctaaaattacgattatgataaatatgaaatagtaagataataaaatgcagtttattagtttcactaaataatctctataatatt 200  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11901643 ctaaaattacagttatgataaatatgaaatagtaagataataaaatgcagtttattagtttcactaaataatctctataatatt 11901560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 44621 - 44527
Alignment:
Q  99 atctacagccggattcaactaaaattacgattatgataaatatgaaatagtaagataataaaatgcagtttattagtttcactaaataatctcta 193  Q
    ||||||| |||  |||||| ||| ||||  ||||||||||||||||| | ||||||||||||||  |||| ||||||||||||||||||||||||    
T  44621 atctacaaccgagttcaaccaaatttaccgttatgataaatatgaaacaataagataataaaatatagttcattagtttcactaaataatctcta 44527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 24122062 - 24121976
Alignment:
Q  107 ccggattcaactaaaattacgattatgataaatatgaaatagtaagataataaaatgcagtttattagtttcactaaataatctcta 193  Q
    |||| |||||||||| ||||  ||||||||||||||||| | |||||||||| | |  |||| ||||||||||||||||||||||||    
T  24122062 ccgggttcaactaaatttaccgttatgataaatatgaaacaataagataatatagtatagttcattagtttcactaaataatctcta 24121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 47869713 - 47869782
Alignment:
Q  112 ttcaactaaaattacgattatgataaatatgaaatagtaagataataaaatgcagtttattagtttcact 181  Q
    ||||||||||| |||  |||||||||| |||||| ||||||||||||||||| |||| |||  |||||||    
T  47869713 ttcaactaaaactacagttatgataaaaatgaaacagtaagataataaaatgtagttcatttatttcact 47869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 8924144 - 8924097
Alignment:
Q  112 ttcaactaaaattacgattatgataaatatgaaatagtaagataataa 159  Q
    |||||||||||||||  ||||||||||||||||| ||||| |||||||    
T  8924144 ttcaactaaaattacagttatgataaatatgaaaaagtaaaataataa 8924097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 43616739 - 43616773
Alignment:
Q  159 aaatgcagtttattagtttcactaaataatctcta 193  Q
    |||||||||| ||||||||||||||||||||||||    
T  43616739 aaatgcagttcattagtttcactaaataatctcta 43616773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 9464420 - 9464351
Alignment:
Q  112 ttcaactaaaattacgattatgataaatatgaaatagtaagataataaaatgcagtttattagtttcact 181  Q
    ||||||||||| |||  |||||||||| |||||| ||| ||||||||||||| |||| |||  |||||||    
T  9464420 ttcaactaaaactacagttatgataaaaatgaaacagtgagataataaaatgtagttcatttatttcact 9464351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 2741173 - 2741217
Alignment:
Q  115 aactaaaattacgattatgataaatatgaaatagtaagataataa 159  Q
    ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  2741173 aactaaaattacagttatgataaatatgaaacagtaaaataataa 2741217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 21803482 - 21803526
Alignment:
Q  115 aactaaaattacgattatgataaatatgaaatagtaagataataa 159  Q
    ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  21803482 aactaaaattacagttatgataaatatgaaacagtaaaataataa 21803526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University