View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3521_low_3 (Length: 536)
Name: NF3521_low_3
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3521_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 52761661 - 52762168
Alignment:
| Q |
18 |
ttccaatctggtctagtaaatcagttgtgtaaaatgtctcataataaaaatgttagcagaattagatttcatgataatgatagattttggtcaaatttcc |
117 |
Q |
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| T |
52761661 |
ttccaatctggtctagtaaatcagttgtgtaaaatgtctcataataaaaatgttagcagaattagatttcatgataatgatagatcttggtcaaatttcc |
52761760 |
T |
|
| Q |
118 |
aaatgaaaatcaaaagaagcatttaattgttttggagttcaatacacaatcatttgaaattgaggagtctcaacctttttaaatgcatacatagatgtta |
217 |
Q |
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| T |
52761761 |
aaatgaaaatcaaaagaagcatttaattgttttggagttcaatacacaatcatttgaaattgaagagtctcaacctttttaaatgcatacatagatgtta |
52761860 |
T |
|
| Q |
218 |
taggtacctgtgaagcgtaggtctgttggaatgggcttttatcttcattaagctgaagaattgatttaaacaagatttatcaatgtagtatataaataat |
317 |
Q |
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| T |
52761861 |
taggtacctgtgaagcgtaggtctgttggaatgggcttttatcttcattaagctgaagaattgatttaaacaagatttatcaatgtagtatataaataat |
52761960 |
T |
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| Q |
318 |
gctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcatcaagaatgcaaagtgagaaaggacaaagattggtaattaa |
417 |
Q |
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| T |
52761961 |
gctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcataaagaatacaaagtgag-aaggacaaagattggtaattaa |
52762059 |
T |
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| Q |
418 |
aggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaattgaacaagttgca |
517 |
Q |
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| T |
52762060 |
aggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaattgaacaagttgca |
52762159 |
T |
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| Q |
518 |
caggttctg |
526 |
Q |
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| T |
52762160 |
taggttctg |
52762168 |
T |
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