View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3521_low_7 (Length: 316)

Name: NF3521_low_7
Description: NF3521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3521_low_7
NF3521_low_7
[»] chr3 (1 HSPs)
chr3 (1-298)||(46246339-46246636)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 46246636 - 46246339
Alignment:
Q  1 ggccattgatccatttatagtataccctattgtaattcttagttataacaagcaagtcaatgcaattaccaaataccaacccaaatttac---atttcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  46246636 ggccattgatccatttatagtataccctattgtaattcttagttataacaagcaagtcaatgcaattaccaaataccaacccaaatttacattatttcca 46246537  T
Q  98 gatttttgataggaccgatttccaccccatacaatggaaatccnnnnnnnggtacaatttcatctaatgagaaaaatctttagccaaatagtgaatggtt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46246536 gatttttgataggaccgatttccaccccatacaatggaaatccaaaaaaaggtacaatttcatctaatgagaaaaatctttagccaaatagtgaatgatt 46246437  T
Q  198 taacccaaatttcgtgatgccaaccttttttccctcnnnnnnnnnnnnnnnttcatcatctattctaatccactcctatataacccttcacattcccata 297  Q
    ||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246436 taacccaaatttcgtgatgccaaccttttttccctc---aaaaaaacaaaattcatcatctattctaatccactcctatataacccttcacattcccata 46246340  T

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