View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3522_low_1 (Length: 529)
Name: NF3522_low_1
Description: NF3522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3522_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 48 - 324
Target Start/End: Original strand, 37685784 - 37686060
Alignment:
| Q |
48 |
tgtcaagaagactattaagaattgggtgtttcagtgtaagccataagcaaagtgtcgagggtctccttgtagacattaataaaatattggaaaatagtaa |
147 |
Q |
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| T |
37685784 |
tgtcaagaaaactattaagaattgggtgtttcagtgtaagccataagcaaagtgtcgagggtctccttgtagacattaataaaatattggaaaatagtaa |
37685883 |
T |
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| Q |
148 |
tgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattgcaaaataatattgatttttattgttcctttttctagaacccatac |
247 |
Q |
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| T |
37685884 |
tgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattggaaaataatattgatttttattgttcctttttctagaacccatat |
37685983 |
T |
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| Q |
248 |
acaaccaatgaaaacgtgcgattgcctacatacataacttttgttatttcatttggttagtaaatcttccaatatta |
324 |
Q |
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| T |
37685984 |
acaaccaatgaaaacgtgcgattgcctacatacataacttttgttatttcatttggttagtaaatcttccaatatta |
37686060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 37686132 - 37686190
Alignment:
| Q |
342 |
gaagcacaaacttgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
400 |
Q |
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| T |
37686132 |
gaagcacaaacctgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
37686190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 7497992 - 7497677
Alignment:
| Q |
1 |
gaggcgaaattgagcaagatatatgtagatactaaggagagaatacatgtcaagaagactattaagaattgggtgtttcagtgtaagccataagcaaagt |
100 |
Q |
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| T |
7497992 |
gaggcgaaattgagcaagatata----gatactaaggagagaatacatgtcaagaagactattgagaattgggtgtttcagtgtaagccataagcaaagt |
7497897 |
T |
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| Q |
101 |
gtcgagggtctccttgtagacattaat-aaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaacacaataattcaccaatta |
199 |
Q |
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| T |
7497896 |
gtcgagggtctccttatagacattaataaaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaacacaataattcaccaatta |
7497797 |
T |
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| Q |
200 |
ttgcaaaataatattgatttttattgttcctttttctagaacccatacacaaccaatgaaaacgtgcgattgcctacatacataacttttgttatttcat |
299 |
Q |
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| T |
7497796 |
ttg---aataatattgatttttattgttcctttttctagaacccat--acaaccaatgaaaacgtgtgattgcctgcatacataacttttgttatttcat |
7497702 |
T |
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| Q |
300 |
ttggttagtaaatcttccaatatta |
324 |
Q |
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| T |
7497701 |
ttggttagtaaatcttccaatatta |
7497677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 7497605 - 7497547
Alignment:
| Q |
342 |
gaagcacaaacttgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
400 |
Q |
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| T |
7497605 |
gaagcacaaacctgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
7497547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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