View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3522_low_2 (Length: 395)
Name: NF3522_low_2
Description: NF3522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3522_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 395
Target Start/End: Complemental strand, 42547002 - 42546616
Alignment:
| Q |
5 |
acatcatcactttaaaataatactgataaattaaaaaatattgtagttggtgtgatgtattagtttcatctcaaagtctcatttgttgactgtaacttat |
104 |
Q |
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| T |
42547002 |
acatcatcactttaaaataatactaataaattaaaaaatattgtagttggtgtgatgtattagtttcatctcaaagtcacatttgttgactgtaacttat |
42546903 |
T |
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| Q |
105 |
ttttgtgcttaataaaagcttaagtggcaatgaaatggcacaaaccaattggttagttaaggttccaaaatttgatatcgctgaaaatgacatctaatta |
204 |
Q |
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| T |
42546902 |
ttttgtgcttaataaaagcttaagtggcaatgaaatggcacaaaccaattggttagttaaggttccaaaatttgatattgctgaaagtgacatctaatta |
42546803 |
T |
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| Q |
205 |
cacgtatatatgatcttcatactatttgcaggcgtattaatcaattacattgcacctattaaaactttaatactacgtactcctgcattattagtattnn |
304 |
Q |
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| T |
42546802 |
cacgtatatatgatgttcatactatttgcaggcgtattaatcaattacattgcacctattaaaactttaatactacgtactcctgcattattagtattaa |
42546703 |
T |
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| Q |
305 |
nnnnnnnnnnctagaaatggtatatactacttctgagtataaattctatctatattcttatgactacttccataacgcgctcttcgcctct |
395 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42546702 |
aaaataaaaactagaaatggtatatactacttctgagtataaat----tctatattcttatgactacttccataacgcgctcttcacctct |
42546616 |
T |
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