View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3522_low_3 (Length: 344)
Name: NF3522_low_3
Description: NF3522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3522_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 42547444 - 42547621
Alignment:
| Q |
61 |
atatctatatccctttccttatatcttatcttcctgaggtgattttgattgaaaactaacaagatgttagggaaaaagattgtatctatcaagaaactag |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42547444 |
atatctatatccctttccttatatcttatcttcctgaggtgattttgattgaaaactaacaagatgttagggaaaaagattgtatctatcaagaaactag |
42547543 |
T |
|
| Q |
161 |
caaaaaaggtgaaggttgtaggtagagttgactctgaccctgctcactttaagttgttgaaggaatgcgaggaagaag |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42547544 |
caaaaaaggtgaaggttgtaggtagagttgactctgaccctgctcactttaagttgttgaaggaatgtgaggaagaag |
42547621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 42551732 - 42551863
Alignment:
| Q |
95 |
tgaggtgattttgattgaaaactaacaagatgttagggaaaaagattgtatctatcaagaaactagcaaaaaaggtgaaggttgtaggtagagttgactc |
194 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
42551732 |
tgaggtgatttagatttacaactaacaagatgttagggaaaaagattgtatcgatcaagaaacttgcaaaaaaggtaaaggttataggtagagttgactc |
42551831 |
T |
|
| Q |
195 |
tgaccctgctcactttaagttgttgaaggaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42551832 |
tgaccctgctcactttaagttgttgaaggaat |
42551863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 42547422 - 42547377
Alignment:
| Q |
21 |
aggaattggctatcgtgcaaggtgaagtaataatgactgcatatct |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42547422 |
aggaattggctatcgtgcaaggtgaagtaataatgactgcatatct |
42547377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 42547660 - 42547709
Alignment:
| Q |
277 |
tgtggtgtttttgtactgtatgttggggaggaacgacagaaatatgtggt |
326 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42547660 |
tgtggtgtttttgcactatatgttggggaggaacgacagaaatatgtggt |
42547709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 42551915 - 42551963
Alignment:
| Q |
278 |
gtggtgtttttgtactgtatgttggggaggaacgacagaaatatgtggt |
326 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||| ||| ||||| |
|
|
| T |
42551915 |
gtggtgtttttgcactatatgttggggatgaacgacagagatacgtggt |
42551963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University