View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3523_high_1 (Length: 689)
Name: NF3523_high_1
Description: NF3523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3523_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 20 - 678
Target Start/End: Original strand, 34239550 - 34240208
Alignment:
| Q |
20 |
gtaacgcctagttctttctgcacaactcaacaacacattcaagtgttattgctaaagcatctcagttagtgtactactttcgattgcatactagttccaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239550 |
gtaacgcctagttctttctgcacaactcaacaacacattcaagtgttattgctaaagcatctcagttagtgtactactttcgattgcatactagttccaa |
34239649 |
T |
|
| Q |
120 |
ggcgtaggtggctgaggtaggatgaaggcattctagttctaggattcaaacctgattactaaggttagatgtaaaagttagttacacaagttagttgttc |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239650 |
ggcgtaggtggctgaggtaggatgaagacattctagttctaggattcaaacctgattactaaggttagatgtaaaagttagttacacaagttagttgttc |
34239749 |
T |
|
| Q |
220 |
taatcggctatataagtcttattgtacacgctagttgttctatacttttatcttatcaatgacttctattaagaatagttataaccataataagaagtaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239750 |
taatcggctatataagtcttattgtacacgctagttgttctatacttttatcttatcaatgacttctattaagaatagttataaccataataagaagtaa |
34239849 |
T |
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| Q |
320 |
tatttacttgtgaaaaaagaaagattaaaaagcaggaggcacctcttggaaagtatcattgaaagaaatgcggtgaccatctttttcagtatctacaagg |
419 |
Q |
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| T |
34239850 |
tatttacttgtgaaaaaagaaagattaaaaagcaggaggcacctcttggaaagtatcattgaaagaaatgcggtgaccatctttttcagtatctacaagg |
34239949 |
T |
|
| Q |
420 |
actccatcacagtcaaaaagaagagctgagggaagcgtggaagatgctgaagccgaggctgagcaactcaacctacgtcttctggttgttgaagttgata |
519 |
Q |
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| T |
34239950 |
actccatcacagtcaaaaagaagagctgagggaagcgtggaagatgctgaagccgaggctgagcaactcaacctacgtcttctggttgttgaagttgata |
34240049 |
T |
|
| Q |
520 |
tcttaagagctttgacagtgaaagaggatggtgaagtactgtgttgttcatgctccttcttgttgtgtttaaggaggctaataagtgttgttgtttttgg |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240050 |
tcttaagagctttgacagtgaaagaggatggtgaagtactgtgttgttcatgctccttcttgttgtgtttaaggaggctaataagtgttgttgtttttgg |
34240149 |
T |
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| Q |
620 |
ttgatgagttcgattcaacaatgaagcagatgaaatggagatgatgctatttgatgatg |
678 |
Q |
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| T |
34240150 |
ttgatgagttcgattcaacaatgaagcagatgaaatggagatgatgctatttgctgatg |
34240208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 35093967 - 35094025
Alignment:
| Q |
184 |
ttagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttatt |
242 |
Q |
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| T |
35093967 |
ttagatgtaaaagttagttacactagttagttgctctcattgcctatataagtcttatt |
35094025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 483984 - 484020
Alignment:
| Q |
262 |
tacttttatcttatcaatgacttctattaagaatagt |
298 |
Q |
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| T |
483984 |
tacttttctcttatcaatgacttctattaagaatagt |
484020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 40563 - 40620
Alignment:
| Q |
185 |
tagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttatt |
242 |
Q |
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||||||||||||| |||||||| |||||||| |||||| | ||||||||| |||||| |
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| T |
40563 |
tagatgtaaaagtaagttacactagttagttaatctaattgactatataagccttatt |
40620 |
T |
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